Pairwise Alignments

Query, 308 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 340 a.a., ABC transporter-related protein (RefSeq) from Shewanella loihica PV-4

 Score =  355 bits (912), Expect = e-103
 Identities = 182/324 (56%), Positives = 234/324 (72%), Gaps = 19/324 (5%)

Query: 2   SDYAIHAENVVKQFGHFTAIENINLKVERGSIYGFLGPNGCGKSTTIRVLTGLLQPTAGQ 61
           +D AI A  V K+FG   A+  ++L+V++G IYGFLGPNGCGKSTTIR+LTGLL PT G+
Sbjct: 5   ADLAIDARGVDKRFGDLLAVAELDLQVQKGHIYGFLGPNGCGKSTTIRMLTGLLTPTRGE 64

Query: 62  IKVLGLSIPKQSELLRLKIGYMTQKFSLYDDLTVQENLQFIGQIFGMNRSTLQQRTQAQL 121
           I VLG++IP+Q+E LR +IGYMTQKFSLY+DL+V+ENLQFI  I+G+     +++    +
Sbjct: 65  ISVLGMAIPQQAEALRRRIGYMTQKFSLYEDLSVRENLQFIADIYGLGARESKRKIDELI 124

Query: 122 KTYGLDERRKQRVSGMSGGQKQRLALAAATMHNPELLFLDEHTSAVDPENRREFWEQLFD 181
            TY LD +R+Q    +SGGQKQRL LA A ++ PELLFLDE TSAVDP+NRR+FWEQLFD
Sbjct: 125 DTYHLDAQRQQLAGTLSGGQKQRLGLACACINEPELLFLDEPTSAVDPQNRRDFWEQLFD 184

Query: 182 LSAQGTTILVTTHYMDEAERCHRLAIMEAGEIRADDEPEKLMQQMGVNVVEIKAPALRSL 241
           LS +GT+ILVTTHYMDEA+RCH+LAIME+G IRA   P+ L++ M ++V+EI    LR L
Sbjct: 185 LSERGTSILVTTHYMDEAQRCHQLAIMESGHIRAKGNPQALLEAMPLHVIEIAGHRLRQL 244

Query: 242 KEKLLNFSQVRSAAQLGIRLRVLVHRDVIDPILWL-------------------RHTFPQ 282
           K  L  FS++ SAAQLG RLRVLV + + DPI WL                   +    Q
Sbjct: 245 KSHLSQFSEIPSAAQLGDRLRVLVDKQIADPIPWLLEKSRTMTGQLTPEPLSPNQFNASQ 304

Query: 283 LAAAELTLARPSLEDVFVTVTGKG 306
           L   +L+L  P+LED+FV+VTGKG
Sbjct: 305 LKPNQLSLVSPNLEDLFVSVTGKG 328