Pairwise Alignments

Query, 315 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056

Subject, 358 a.a., Multidrug resistance efflux pump from Pseudomonas stutzeri RCH2

 Score = 84.0 bits (206), Expect = 5e-21
 Identities = 78/299 (26%), Positives = 138/299 (46%), Gaps = 14/299 (4%)

Query: 28  GTLERDRITFSATSNEIIRELPIAEGEHVKVGDVLVKLDSQIQTTLLTQALAQQAKAQAS 87
           G +E   I  +      IRE+ + EG+ V+ G V+ ++D+++    L QA AQ  +A+ +
Sbjct: 44  GRIEATEIDVATKLGGRIREISVDEGDFVQPGQVIARMDTEVLDAQLNQARAQVRQAENA 103

Query: 88  L--NKLTNGERPEDIAVAQARVAKARAQHKEAELTLNRKAELVAKQLISQSEVDAARSAR 145
           +   +    +R  + A A+A V + RA+   A+    R   LV +  + + ++D   +A 
Sbjct: 104 ILTAQALVTQRESEKATAEAVVLQRRAELTAAQKRHQRTETLVGRNALPRQQLDDDLAAM 163

Query: 146 DSAQAELASAHEEFTKLTAG--ARIEDIEQAKAELAVAQANVTLQQQKLDELTILATRDG 203
            SAQA LA++  +     AG  A    + +A++ L  AQA+V   Q  + +  +   R  
Sbjct: 164 QSAQAALAASRSQVLSADAGIAAARSQVIEAQSALEAAQASVVRLQADITDSELKTDRVA 223

Query: 204 ILDSLPYHLGERV-ANNAVVAIVQADRLPYARVYVPATHRAAFVVGQTVTVHVDGIKDQY 262
            +       GE + A   ++ +V    + Y   ++P        +G  V + +D    QY
Sbjct: 224 RVQYRVAQPGEVLGAGGKLLNLVDLADV-YMTFFLPERQAGRVAMGSEVRLVIDA-APQY 281

Query: 263 --QGKIRWVANEPSFTPYYALTEKERSRLMY--LAEVD---LPESAMDLPSGLPAQVDL 314
               K+ +VA+   FTP    TE ER +LM+   A +D   L +    + +GLP    L
Sbjct: 282 VIPAKVTYVASVAQFTPKTVETESEREKLMFRVKARIDPELLRKHMEQVKTGLPGMAYL 340