Pairwise Alignments

Query, 315 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056

Subject, 363 a.a., multidrug resistance efflux pump from Xanthomonas campestris pv. campestris strain 8004

 Score = 85.1 bits (209), Expect = 2e-21
 Identities = 68/231 (29%), Positives = 106/231 (45%), Gaps = 6/231 (2%)

Query: 45  IRELPIAEGEHVKVGDVLVKLDSQIQTTLLTQALAQQAKAQASLNKLTNGERPEDIAVAQ 104
           + ++P+ +  HV+ G +L K+D +I    L QA AQ    QA+L          +  +A+
Sbjct: 75  VTQVPVQDFAHVRRGQLLAKIDDRIYAQHLEQAKAQLQTTQANLANWEQQRHSAEATIAE 134

Query: 105 AR--VAKARAQHKEAELTLNRKAELVAKQLISQSEVDAARSARDSAQAELASAHEEFTKL 162
            R  ++  +AQ         R  +L  ++L+S+ + D A +AR  A A +A A       
Sbjct: 135 QRATLSSNQAQRDRTRSAYARAQQLANQKLVSEQDRDTAFAARAQADAGVAQARAAVQAA 194

Query: 163 TAGARIEDIEQAKAELAV--AQANVTLQQQKLDELTILATRDGILDSLPYHLGERVANNA 220
              AR   + +A  E AV  AQA V L Q  LD   ILA RDG L  L    G  V N  
Sbjct: 195 EENARSVTVNRAALEAAVANAQAAVQLAQINLDNTRILAPRDGQLGQLGVRQGAYVTNGT 254

Query: 221 VVAIVQADRLPYARVYVPATHRAAFVVGQTVTVHVDGIKD-QYQGKIRWVA 270
            +  +  D L +       T  A   VGQ  +  VD + + + QG+++ ++
Sbjct: 255 QLMALVPDTL-WVVANFKETQMANVRVGQRASFTVDALANARLQGRVQEIS 304