Pairwise Alignments

Query, 315 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056

Subject, 520 a.a., efflux RND transporter periplasmic adaptor subunit from Synechocystis sp000284455 PCC 6803

 Score = 73.9 bits (180), Expect = 8e-18
 Identities = 65/245 (26%), Positives = 106/245 (43%), Gaps = 52/245 (21%)

Query: 27  LGTLERDR-ITFSATSNEIIRELPIAEGEHVKVGDVLVKLDSQIQTTLLTQALAQQAKAQ 85
           +GTLE  + +   +  +  + E+ + EG+ V+ G VL ++D+ +  T L +A A  A A+
Sbjct: 96  MGTLEAPKGMEIDSEIDGRVEEILVREGQRVEQGQVLFRIDNDVLQTQLLEAQANLAAAR 155

Query: 86  ASLNKLTNGERPEDIAVAQAR-------------------VAKARAQHKEAELT------ 120
           A L +L  G R ED+A A A+                   +A+A+AQ   A+        
Sbjct: 156 AQLAELEAGSRQEDVAAAAAQLRQAQTRLANAQGGASPEEIAQAQAQLDSAKAAAELASE 215

Query: 121 ----------------------LNRKAELVAKQLISQSEVDAARSARDS----AQAELAS 154
                                 L  + + +A    +Q  +   R AR S      AE+ +
Sbjct: 216 RVRRFRNLRDQGVISLDAYDQQLKEERQAIADVEAAQRRLQQLRQARSSDVERLTAEVDA 275

Query: 155 AHEEFTKLTAGARIEDIEQAKAELAVAQANVTLQQQKLDELTILATRDGILDSLPYHLGE 214
             +   +L AG R E I QA+A +  A A+V   Q +LD+  I A   G++  +P  LG+
Sbjct: 276 QRQNLNRLQAGERPETIAQARARVGQALASVKTLQARLDKSEITAPFAGVVGYIPVKLGD 335

Query: 215 RVANN 219
            V  N
Sbjct: 336 YVQAN 340