Pairwise Alignments

Query, 315 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056

Subject, 360 a.a., RND family efflux transporter MFP subunit (RefSeq) from Shewanella loihica PV-4

 Score = 47.8 bits (112), Expect = 4e-10
 Identities = 54/207 (26%), Positives = 98/207 (47%), Gaps = 31/207 (14%)

Query: 4   SLSIASLLALLLSACSAENP---PQALGTLERDRITFSATSNEIIRELPIAEGEHVKVGD 60
           SLS+  +L L+L+ CS E+    P+++  ++   IT   +    +R  P A+    K  +
Sbjct: 7   SLSLL-VLTLVLAGCSTESAEIAPESVRPVKLLEITELGSGT--LRSFP-AKVAATKQAE 62

Query: 61  VLVKLDSQ-IQTTLLTQALAQQAKAQASLNKLTNGERPEDIAVAQARVAKARAQHKEAEL 119
           +  +L  Q I+ +L+      + +  A L          D   A+ ++    A H+ A+ 
Sbjct: 63  LSFRLSGQLIEFSLVDGQRVTKGEVLARL----------DDRDARNQLLNREADHELAQA 112

Query: 120 TLNRKAELVAKQLISQSEVDAARSARDSAQAELASAHEE---------FTKLTAGARIED 170
             NRK EL+ + LISQ+E D A++   S+ A LASA ++         F+   A  +IE+
Sbjct: 113 DFNRKGELLRQALISQAEYDLAKAQLKSSAANLASAQDQLSYTVIKAPFSGTVAKTKIEN 172

Query: 171 IEQAKAELAVAQANVTLQQQKLDELTI 197
            +  +A     Q  + LQ+ +  ++ I
Sbjct: 173 FQIVQAN----QPVLVLQKDRFIDVVI 195