Pairwise Alignments

Query, 315 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056

Subject, 321 a.a., multidrug resistance efflux pump from Dechlorosoma suillum PS

 Score =  106 bits (265), Expect = 6e-28
 Identities = 86/319 (26%), Positives = 143/319 (44%), Gaps = 7/319 (2%)

Query: 2   IQSLSIASLLAL---LLSACSAENPPQALGTLERDRITFSATSNEIIRELPIAEGEHVKV 58
           ++S ++  LLA    LL+AC  +  P   G +E + +  +A     ++ L    G  V  
Sbjct: 1   MKSATLPLLLAAALPLLAACGRDAAPAYPGYVEGEYLYLAAPQAGYLKSLETPRGSRVSQ 60

Query: 59  GDVLVKLDSQIQTTLLTQALAQQAKAQASLNKLTNGERPEDIAVAQARVAKARAQHKEAE 118
           G  L  + +      L +A A+ A A+     L    R  +IA  +A +  A A  + A 
Sbjct: 61  GQALFAVAADPDAQALAEAEARIAAAREKAENLKEPRRAPEIAGLEANLRAAEAGRRLAR 120

Query: 119 LTLNRKAELVAKQLISQSEVDAARSARDSAQAELASAHEEFT--KLTAGARIEDIEQAKA 176
             L+++  L  +  ++Q+++D A+SA D A A+  +A ++    + T G + E ++ A+A
Sbjct: 121 TRLDQQQALARQNFVAQAKLDEAQSAFDQAVAQEEAARQQLATYRSTLGRQAE-VKGAEA 179

Query: 177 ELAVAQANVTLQQQKLDELTILATRDGILDSLPYHLGERVANNAVVAIVQADRLPYARVY 236
           +L  A A    ++  ++   + A   G +    Y  GE V   A VA +  D     R Y
Sbjct: 180 DLQAAAALAAQKRWVVERKAVSAPAAGEVTETYYRPGEWVPAGAAVASLLPDNRRKLRFY 239

Query: 237 VPATHRAAFVVGQTVTVHVDGIKDQYQGKIRWVANEPSFTPYYALTEKERSRLMYLAE-V 295
           VP T  A    GQ V    DG     +  I ++A +  +TP    +   R +L++  E  
Sbjct: 240 VPETALAGLKPGQAVEAACDGCTQPIRASIDFIAPQAEYTPPVIYSRGSREKLVFRIEAA 299

Query: 296 DLPESAMDLPSGLPAQVDL 314
             PE A  L  GLP  V L
Sbjct: 300 PAPEQAASLRPGLPVDVRL 318