Pairwise Alignments

Query, 315 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056

Subject, 308 a.a., hypothetical HlyD family secretion protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  217 bits (552), Expect = 3e-61
 Identities = 116/304 (38%), Positives = 188/304 (61%)

Query: 12  ALLLSACSAENPPQALGTLERDRITFSATSNEIIRELPIAEGEHVKVGDVLVKLDSQIQT 71
           ALL  A   +  P+ LGT+ERDR+T +A   E+I ++ + EG+ VK G+VL++LDS    
Sbjct: 5   ALLQLAGCGDESPRVLGTVERDRLTLTAPVGELIHKINVVEGQQVKAGEVLLELDSTAVN 64

Query: 72  TLLTQALAQQAKAQASLNKLTNGERPEDIAVAQARVAKARAQHKEAELTLNRKAELVAKQ 131
             L Q  A+  +AQA  ++   G R EDI  A+A +  A A  KEA+ +  R   L   +
Sbjct: 65  ARLAQRQAELKQAQAKFDEAVTGARFEDIDKARAVLNGANASVKEAKQSFERTQRLFKTK 124

Query: 132 LISQSEVDAARSARDSAQAELASAHEEFTKLTAGARIEDIEQAKAELAVAQANVTLQQQK 191
           ++SQ+++DAAR+A+D++ A+ A A +    L  G R E IEQA++ + VA A V L+Q+ 
Sbjct: 125 VLSQADLDAARAAKDTSLAKQAEAEQSLRLLQNGTRSEQIEQARSAVDVAIAAVALEQKA 184

Query: 192 LDELTILATRDGILDSLPYHLGERVANNAVVAIVQADRLPYARVYVPATHRAAFVVGQTV 251
           L +L+++A +  ++D+LP+ +G+RVA  + +  + A   P+ R+Y+PAT       G  V
Sbjct: 185 LKDLSLVAAKHAVVDTLPWRVGDRVAAGSQLIGLLAIERPFVRLYLPATWLDRVKAGSHV 244

Query: 252 TVHVDGIKDQYQGKIRWVANEPSFTPYYALTEKERSRLMYLAEVDLPESAMDLPSGLPAQ 311
            + VDG      G +R + ++P++TP+YAL E++R+RLMYL ++D+ E    L +G+P +
Sbjct: 245 DILVDGRAAPIAGTVRNIRSQPAYTPFYALNERDRARLMYLTDIDIAEEGQSLATGMPLE 304

Query: 312 VDLP 315
           V LP
Sbjct: 305 VRLP 308