Pairwise Alignments

Query, 315 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056

Subject, 361 a.a., multidrug transporter EmrA from Klebsiella michiganensis M5al

 Score = 79.3 bits (194), Expect = 1e-19
 Identities = 73/246 (29%), Positives = 118/246 (47%), Gaps = 9/246 (3%)

Query: 32  RDRITF-SATSNEIIRELPIAEGEHVKVGDVLVKLDSQIQTTLLTQALAQQAKAQASLNK 90
           R + TF S   N  I E+ + +   VK GDVL ++D +I    + QA A  A  +A+L  
Sbjct: 58  RGQTTFISPQVNGYITEVKVQDFNQVKAGDVLFQIDERIYKQRVHQAQATLAMKEAALKN 117

Query: 91  LTNGERPEDIAVA--QARVAKARAQHKEAELTLNRKAELVAKQLISQSEVDAAR--SARD 146
                R  +  +A  +A +  ARAQ+ + +  L R  EL A   +S  E D+AR  +A+ 
Sbjct: 118 NQQQRRSAEAVIARNEAALQNARAQNLKTQADLKRVQELTADGSLSIRERDSARASAAQG 177

Query: 147 SAQAELASAHEEFTKLTAGARIEDIEQAKAELAVAQANVTLQQQKLDELTILATRDGILD 206
           +A  E A A  E ++    + I + +   A++A A+A + L Q  L    I+A  DG L 
Sbjct: 178 TADIEQAKATLEMSRQDLQSTIVNRDSLLADVASAKAALELAQIDLQNTRIIAPTDGQLG 237

Query: 207 SLPYHLGERV-ANNAVVAIVQADRLPYARVYVPATHRAAFVVGQTVTVHVDGI-KDQYQG 264
            +   LG  V A   + ++V       A   +  T  A   VGQ VT  VD +  +++ G
Sbjct: 238 QISVRLGAYVTAGTHLTSLVPPQHWLIAN--LKETQLAQVRVGQRVTFTVDALNSEKFTG 295

Query: 265 KIRWVA 270
            ++ ++
Sbjct: 296 TVQSIS 301