Pairwise Alignments

Query, 315 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056

Subject, 304 a.a., conserved hypothetical protein, putative membrane protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 68.6 bits (166), Expect = 2e-16
 Identities = 74/304 (24%), Positives = 133/304 (43%), Gaps = 42/304 (13%)

Query: 5   LSIASLLALLLSACSAENPP-QALGTLERDRITFSATSNEIIRELPIAEGEHVKVGDVLV 63
           + I  +   +LSAC    P   A GT E   +  SA +   + +L + EG  +K G+ + 
Sbjct: 7   IGIYGMAVWMLSACGNGTPDYDATGTFEATEVIVSAEAAGKLLQLEVEEGTRLKAGEEVG 66

Query: 64  KLDSQIQTTLLTQALAQQAKAQASLNKLTNGERPE---DIAVAQARVAKARAQHKEAELT 120
            +D+        Q   ++ + +AS+ K    +RP+    IA  + ++  A+ + K  E  
Sbjct: 67  LVDT-------VQLYLKKLQLEASM-KSVESQRPDLAKQIAATKQQITTAQREKKRVE-- 116

Query: 121 LNRKAELVAKQLISQSEVDAARSARDSAQAELASAHEEFTK----LTAGARIEDIEQAKA 176
                 L+A    +Q ++D   +     Q +L +      K    LT       I+ A+ 
Sbjct: 117 -----NLLAAGAANQKQLDDWDAQVTLLQQQLIAQESSLMKSTNSLTEQGNSVSIQVAQV 171

Query: 177 ELAVAQANVTLQQQKLDELTILATRDGILDSLPYHLGERVAN--NAVVAIVQADRLPYAR 234
           E  + + ++    Q   E T+LA          Y  G  +A+    +  + + DR+ Y R
Sbjct: 172 EDQLNKCHI----QSPIEGTVLAK---------YAEGGELASVGKPLFKVGEVDRM-YLR 217

Query: 235 VYVPATHRAAFVVGQTVTVHVD-GIKDQ--YQGKIRWVANEPSFTPYYALTEKERSRLMY 291
            YV +   +   +G  VTV+ D G  +Q  Y G + W+++   FTP   LT+ ER+ L+Y
Sbjct: 218 AYVTSEQLSQVKLGDKVTVYSDYGNSEQKAYPGVVTWISDRSEFTPKTILTKNERANLVY 277

Query: 292 LAEV 295
             ++
Sbjct: 278 AVKI 281