Pairwise Alignments

Query, 315 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056

Subject, 373 a.a., RND family efflux transporter MFP subunit (RefSeq) from Shewanella sp. ANA-3

 Score = 52.8 bits (125), Expect = 1e-11
 Identities = 64/228 (28%), Positives = 90/228 (39%), Gaps = 54/228 (23%)

Query: 45  IRELPIAEGEHVKVGDVLVKLDSQIQTTLLTQALAQQAKAQASLNKLTNGERPEDIAVAQ 104
           + EL +  G  V  G VL KLD+                      +L + E  E     Q
Sbjct: 78  LSELTVDSGAKVTQGQVLAKLDT----------------------RLLDAEHQE----IQ 111

Query: 105 ARVAKARAQHKEAELTLNRKAELVAKQLISQSEVDAARSARDSAQAELASAHEEFTKLTA 164
           A +A+ +A    A  TLNR  EL     +S+  +D  R+       +LAS          
Sbjct: 112 ASLAQTQADVDLATSTLNRNLELKKSGYVSEQLLDENRT-------QLAS---------- 154

Query: 165 GARIEDIEQAKAELAVAQANVTLQQQKLDELTILATRDGILDSLPYHLGERVANNAVVAI 224
                 +E AK  L  +Q      Q K D+  +LA  DGI+    ++LGE VA  + V  
Sbjct: 155 ------LEAAKKRLLASQR---ANQLKRDKSQLLAPFDGIISQRQHNLGEVVAAGSPVFT 205

Query: 225 VQADRLPYARVYVPATHRAAFVVGQTVTVHVDGIKDQYQGKIRWVANE 272
           +       A + VP      FV GQ VTV V     Q+  KI  ++ E
Sbjct: 206 LVGSVNTEAYIGVPVAVAQQFVNGQNVTVSVH--NQQFIAKIAGISAE 251