Pairwise Alignments

Query, 417 a.a., serine transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 423 a.a., aromatic amino acid permease (RefSeq) from Shewanella loihica PV-4

 Score =  488 bits (1257), Expect = e-142
 Identities = 240/422 (56%), Positives = 323/422 (76%), Gaps = 6/422 (1%)

Query: 1   MKDSQEVTHFSAARSSKWTQHDTYWLLSLFGTAVGAGILFLPINIGLGGFWPLVLMAVLA 60
           M++   ++  + A+   WT+ DT W+LSLFGTAVGAGILFLPIN G+GGFWPLVLMAV+ 
Sbjct: 1   MQNEATISDVNLAQRQGWTRSDTTWMLSLFGTAVGAGILFLPINAGMGGFWPLVLMAVII 60

Query: 61  FPMTYLSHRGLARFVLSSRRPNADFTDVVEEHFGQNAGRLISLLYFLSIFPILLIYGVGL 120
            PMTYL+HRGL+RFV SS+R  +D T VVEE+FG  AG+ I+LLYF +I+PI+LIYGVG+
Sbjct: 61  GPMTYLAHRGLSRFVCSSQRQGSDITHVVEEYFGVGAGKAITLLYFFAIYPIVLIYGVGI 120

Query: 121 TNTVDSFLVNQADMVSPPRALLSGALVFGLIAIMLSGEKIMLRAFAIMVYPLAAILALLS 180
           TNTVDSF+VNQ  M SPPR LLSG LV G++++M+SGEK ML+   ++VYPL  ILA +S
Sbjct: 121 TNTVDSFIVNQLGMASPPRFLLSGILVLGMMSVMVSGEKFMLKVTQLLVYPLVGILAFMS 180

Query: 181 LYLIPYWSMPS-FDFPQTSDFLHTVWLAVPVVVFSFSHAAAISSFANIQRRHYGEQADQK 239
           LYLIP W M +  + P   +FL TVWL +PV+VF+F+H+ AIS F+   ++ YG  A +K
Sbjct: 181 LYLIPSWKMDALMEVPAAGEFLGTVWLTIPVLVFAFNHSPAISQFSVSLKKQYGSNAAKK 240

Query: 240 SEQILRHTSVVLILFVLLFVFSCVLALSPQALQEAKAQNISVLTYLANVTDNPFIATLGP 299
           ++ ILR+TS++L+ FV+LFVFSCVL+LSP  L EAKAQN+ +L+YLANV  + F++  GP
Sbjct: 241 ADVILRNTSMMLVGFVMLFVFSCVLSLSPAQLAEAKAQNLPILSYLANVHASGFVSYFGP 300

Query: 300 LVAFIAITSSFLGHFLGARESLSGLLTK-----NLGVSLRLAERLTIGFLFVTIWIAAIL 354
           ++A IAI SSF GH+LGA E L G++TK     N  VS    ++  +GF+F+TIW  A++
Sbjct: 301 IIAVIAIVSSFFGHYLGATEGLKGIITKQLRSSNKEVSDAKIDKFILGFMFLTIWGVAVI 360

Query: 355 NPSILGMMEALSGPVIAMILFIMPMIAVFKVPALREHQKRFSTFFVLLVGLLAVSALLYS 414
           NPSILGM+EAL GP+IA IL++MPM AV+KVPAL+ ++ R S   V+L GLLA++A+L+ 
Sbjct: 361 NPSILGMIEALGGPIIAAILYLMPMYAVYKVPALKAYRGRISNILVILAGLLAMTAILFG 420

Query: 415 LL 416
           +L
Sbjct: 421 ML 422