Pairwise Alignments

Query, 1176 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056

Subject, 914 a.a., Signal transduction histidine kinase from Pseudomonas stutzeri RCH2

 Score =  154 bits (390), Expect = 2e-41
 Identities = 95/259 (36%), Positives = 144/259 (55%), Gaps = 7/259 (2%)

Query: 624 LFNDITELKETEQALRQSNEQALQAVEARNHFLAVVSHELRTPIAAMLGLMEILASRLKS 683
           L + I  LKE     R++ E+A    EA++ FLA +SHE+RTP+  +LG++++L      
Sbjct: 381 LADRINLLKEEGYRSREAAERAASENEAKSRFLAKMSHEIRTPLNGVLGMLQLLRETPLD 440

Query: 684 SESQLLLTNAISSAERLKLHVNDILDFSKIEAQQLQLDIGLYNLADELGPLLRGFEASAQ 743
              Q  L    SS   L   +NDILD+++I + +L L+   ++L   +   +R F A + 
Sbjct: 441 RSQQFYLDTISSSGNSLMAVINDILDYARIGSGKLSLEDIDFDLEILISETIRLFTAQSL 500

Query: 744 LKEIEFDVIWSPNSLLLANFDALRFNQIVTNLLSNAIKFTDQGRVVFKI------DVAPE 797
            K++   V   P        D  R  QI+ NLLSNA+KFT+ G V+ ++      D  P 
Sbjct: 501 EKQLSLHVGLEPGVPRRIRGDPTRLKQILMNLLSNALKFTEHGHVLLEVSCRQTPDGGPR 560

Query: 798 MLTIVVEDTGCGMTQTQIESLFVPFAQADSTITRRFGGTGLGMSIVANLIELMNGKIEVK 857
            L   V D+G GM Q  +  LF  F+Q DS+ TRR+GG+GLG++I   L+E+MNG IEV+
Sbjct: 561 -LVFCVSDSGIGMRQEVLAQLFESFSQGDSSTTRRYGGSGLGLAISKELVEMMNGHIEVQ 619

Query: 858 SEFEQGTQIQVNLPLVTQT 876
           S   +G++    +PL T T
Sbjct: 620 SAPGRGSRFCFEIPLRTAT 638



 Score = 71.6 bits (174), Expect = 3e-16
 Identities = 44/149 (29%), Positives = 76/149 (51%), Gaps = 5/149 (3%)

Query: 924  LNRLREVSNLTQAQTEPAHSRLLQGH--VLVADDDAINRLLIKKQLSELGLSATLVSDGL 981
            L  L E      A+T+ A    LQ    +LVA+D+ +N+++++  L + G +  L  +G 
Sbjct: 761  LQALYEREPAQSAETDKASIAPLQSEPCILVAEDNPVNQMVVRGLLKKRGYAVQLADNGR 820

Query: 982  QAFEKLSQHPEQYDLLITDCHMPHLDGFALTRKVKQ---EISLFKGAVVGCTAEDSRLAA 1038
            QA +   + P+   L++ DC MP LDGF  +R++++   +  L    ++  TA       
Sbjct: 821  QAVDLYRRDPDAVQLILMDCEMPELDGFEASRQIRKLEADQQLQAVPIIAVTAHVLAEHR 880

Query: 1039 EQALQAGMDKVIYKPYTLANLRKVLSRYL 1067
            ++ L++GMD+ I KP     L   L  YL
Sbjct: 881  QRGLESGMDEFIGKPLESRQLYACLDSYL 909