Pairwise Alignments

Query, 1176 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056

Subject, 917 a.a., Signal transduction histidine kinase from Pseudomonas stutzeri RCH2

 Score =  186 bits (472), Expect = 8e-51
 Identities = 175/645 (27%), Positives = 288/645 (44%), Gaps = 124/645 (19%)

Query: 641  SNEQALQAVEARNHFLAVVSHELRTPIAAMLGLMEILASRLKSSESQLLLTNAISSAERL 700
            + ++AL+A   ++ FLA +SHE+RTP+  +LG  ++L     +   Q  L     SA+ L
Sbjct: 273  ARKEALEASRIKSEFLANMSHEIRTPLNGILGFTQLLQKSDLTPRQQDYLGTIEKSADSL 332

Query: 701  KLHVNDILDFSKIEAQQLQLDIGLYNLADELGPLLRGFEASAQLKEIEF-DVIWSPNSLL 759
               +N+ILDFSKIEA +L LD   +NL D +   L     +A  K++E   +++    L 
Sbjct: 333  LGIINEILDFSKIEAGKLVLDSIPFNLRDLIEDTLTILAPAAHTKQLELVSLVYRDTPLS 392

Query: 760  LANFDALRFNQIVTNLLSNAIKFTDQGRVVFKIDVAPE-----MLTIVVEDTGCGMTQTQ 814
            L   D LR  Q++TNL+SNAIKFT++G +  +  V  +      L I V+DTG G+T   
Sbjct: 393  LVG-DPLRLKQVLTNLISNAIKFTNEGTIAVRAMVEDDNADRAQLRISVQDTGIGLTDQD 451

Query: 815  IESLFVPFAQADSTITRRFGGTGLGMSIVANLIELMNGKIEVKSEFEQGTQIQVNLPLVT 874
            + +LF  F+QAD++++R+ GGTGLG+ I   LIE M G+I V S  ++G++  ++L L  
Sbjct: 452  LRALFQAFSQADNSMSRQPGGTGLGLVISKRLIEQMGGEIGVDSIPDEGSEFWISLSLPK 511

Query: 875  QTCD-------EFRGQVVAMSYRSPYMLWA-----KALGMRV----------------EE 906
               D         +G+ +A+  + P    A     ++LG+ V                 +
Sbjct: 512  ARDDVEDLPHPALQGRRIALLEQHPLARQALQHQLESLGLEVHTFDTLDQMQAAIGAQRQ 571

Query: 907  NEEWVE-----QSGHNIYPDLLLNRLREVSNL--------------------------TQ 935
            + + ++      +   I P+ L  RL E+  L                          TQ
Sbjct: 572  SSQLIDLAVLGVTAREIQPEALSRRLMEIEALGCKCVVLCPTTEQGHYHDTLPEVHSYTQ 631

Query: 936  AQTEPAHSRLLQ------------------------GHVLVADDDAINRLLIKKQLSELG 971
             Q +PA +R LQ                          VL  DD+  N LL+K  L ++G
Sbjct: 632  LQGKPACTRKLQRVLVELVRPNQTYAAPVAAAPSRAARVLCVDDNPANLLLVKTLLGDMG 691

Query: 972  LSATLVSDGLQAFEKLSQHPEQYDLLITDCHMPHLDGFALTRKVKQEISLFKGA---VVG 1028
                 V +G  A + + QH   +DL++ D  MP +DG   T  ++            ++ 
Sbjct: 692  AEVVAVDNGPAALDAVKQH--SFDLVLMDVQMPGMDGRQTTEAIRHWEHTSGSTPLPIIA 749

Query: 1029 CTAEDSRLAAEQALQAGMDKVIYKPYTLANLRKVLSRYLTTQWVALPEQS---------- 1078
             TA          LQ+GMD  + KP +   L +V+ ++      + P+ S          
Sbjct: 750  LTAHALANEKRSLLQSGMDDYLTKPISDRQLAQVVLKWTGLVLRSQPQHSEPSSQPELSL 809

Query: 1079 ---------WLDAYQEEEREEMAMVVAESLAQDIALLNQ--PDCDVKAL---AHRIKGA- 1123
                      L A + +  ++M  ++ +SL  D   + +     D +AL    HR+ GA 
Sbjct: 810  KVLDKEEGLRLAAGKADLADDMLGMLLQSLEGDRRTIREARQSGDRQALIERVHRLHGAT 869

Query: 1124 --AGSLQLQRLADLAKTVEKQNDPQQLVA--DKQQLINAMHEVVE 1164
               G  QL+     ++T+ KQN P    A  +    I+ + +VV+
Sbjct: 870  RYCGVPQLRNACQQSETLLKQNHPDSETALDELDAAIDRLEQVVQ 914