Pairwise Alignments

Query, 1176 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1353 a.a., PAS from Pseudomonas syringae pv. syringae B728a

 Score =  166 bits (421), Expect = 9e-45
 Identities = 163/535 (30%), Positives = 243/535 (45%), Gaps = 95/535 (17%)

Query: 621  YLTLFNDITELKETEQALRQSNEQALQAVEARNHFLAVVSHELRTPIAAMLGLMEILASR 680
            +L +  DITE       L  +   A  A  A++ FLA +SHE+RTP+ A++G+  +L + 
Sbjct: 611  HLGIAQDITERLHHSAELHAAKSSAEAANAAKSLFLANMSHEIRTPMNAVIGISHLLHNT 670

Query: 681  LKSSESQLLLTNAISSAERLKLHVNDILDFSKIEAQQLQLDIGLYN---LADELGPLLRG 737
              + + + LLT    +   L   +NDILD +KIEA +++L+   ++   L DELG L   
Sbjct: 671  ALNDQQRQLLTKLQIAGRTLLGIINDILDIAKIEAGEMRLEHNPFSPRQLLDELGEL--- 727

Query: 738  FEASAQLKEIEF--DVIWSPNSLLLANFDALRFNQIVTNLLSNAIKFTDQGRVVFKIDVA 795
            F   AQ K + F  +V+ S    L+   DALR NQI+ NL+ NA+KFT  G V   +   
Sbjct: 728  FTPQAQEKGLRFSVNVVASLPGQLIG--DALRVNQILMNLVGNALKFTSVGGVDVTVSRE 785

Query: 796  PE-----MLTIVVEDTGCGMTQTQIESLFVPFAQADSTITRRFGGTGLGMSIVANLIELM 850
             +      L   V+DTGCG+    +  LF PF QAD++ TRRFGGTGLG+S+V  L E M
Sbjct: 786  DDHADTCCLRFSVQDTGCGIPGDVLGQLFSPFTQADASTTRRFGGTGLGLSVVRGLAEQM 845

Query: 851  NGKIEVKSEFEQGTQIQVNLPL-VTQTCDEFRG-----QVVAMSYRSPYML----WAKAL 900
             G+I V+SE   G++  V LP  ++Q+  E  G     +V+ +S  +   +      + L
Sbjct: 846  GGRIGVESELGTGSEFWVELPFQISQSDLEPSGPGSSLEVMLLSDDAQSSMALQRLCRGL 905

Query: 901  GMRV-----EENEEWVEQSGHNI---YPDLLL-----NRLREVSNLTQAQTEP------- 940
            G RV     E +     Q  +++    PD+LL      ++ EV  L +A   P       
Sbjct: 906  GWRVASLTGEHDLRTALQERNHVNAALPDVLLVDWQQPQVEEVQQLIEATPLPVILVTSS 965

Query: 941  ---AHSRLLQGHVLVADDD------AINRLLIKKQLSE-----------------LGLSA 974
               A    L   VL+   D      A+N  + + Q S                   GL  
Sbjct: 966  EIRAELHPLVDKVLLKPLDSSALFNAVNACIARYQGSTERVIQATRMDTSMTLWLSGLHL 1025

Query: 975  TLVSDGLQAFEKLSQHPEQYDLLITDC------------------------HMPHLDGFA 1010
             LV D     E  S   +Q   ++  C                         MP +DG+ 
Sbjct: 1026 LLVDDSEINLEVASLLLQQQGAVVQTCSNGLLALERLRQTPDFFDAVLMDVQMPEMDGYE 1085

Query: 1011 LTRKVKQEISLFKGAVVGCTAEDSRLAAEQALQAGMDKVIYKPYTLANLRKVLSR 1065
             TR+++ E+ L +  V+  TA        QA  AGMD  + KP   A L + + R
Sbjct: 1086 ATRRLRSELGLTRLPVLALTAGALAEERRQAELAGMDDFLTKPLDPAALIRAVRR 1140