Pairwise Alignments

Query, 1176 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1209 a.a., multi-sensor hybrid histidine kinase from Pseudomonas syringae pv. syringae B728a

 Score =  261 bits (668), Expect = 2e-73
 Identities = 298/1187 (25%), Positives = 527/1187 (44%), Gaps = 142/1187 (11%)

Query: 7    LDPNEQAYVEQKSTVTIAVLKEIWMPYWGGTGQEPI-GIEHDFASGIAKELGINIEYKGF 65
            L+  ++A+++Q+  + + +    + P    + +    GI  D+   ++ +L + ++  GF
Sbjct: 54   LEDQDRAWLDQRKVLQVGIAIADYEPIDITSDRNRYQGISADYLGLVSDQLNLPVQVTGF 113

Query: 66   DTIEALLNAVSTGKADM---AIGFGQTLAREGKFLFSKPLYENVRVIWLRDKAMEEKPFA 122
               +  + A+  GK D+   A GF + +  +G    ++ + +   V+   +        A
Sbjct: 114  AKRDEAIEALRDGKIDLLTSANGFERGV--KGLSFSTEYMPDRSVVVGRGNDLSPSSSLA 171

Query: 123  SLKWVCIQGTSYCEILKDRGYPN--IIMARNYSSSVEMIRQGIADATVTNYVSLNHYLSQ 180
              K V + G +  ++L  R YP+  II+A N  S++E + QG  D  + N V +  Y + 
Sbjct: 172  GKKVVLLDGYADSDVLH-RIYPDSQIIIAPNLYSALEALSQGEVDVFIGNEVIVRTYTAL 230

Query: 181  KRLALGKVIFDPDLGVQTNRILINNNEPLLLSAINKVIDADKQGLTENKLN------SAD 234
            +     ++ F+  L        + ++E  LL+ IN+ +D+     +   L        AD
Sbjct: 231  RPYLGLQIKFESRLPPVGFSFAVRDDEQRLLNFINRALDSIAPSTSREVLGRWTMGLGAD 290

Query: 235  V----YFLNDQANLNILRNENVNPVVRYTIQDDLFPMSYWDEKEKKYKGYVHDLLERIST 290
            V      L       +L++ +V      TI     P   + +    + G   D+L RIS 
Sbjct: 291  VEGQRIRLTSAERRWLLKHPSV------TIATVQHPPYIYKDNNGHWVGLNADVLSRISR 344

Query: 291  KSILKFEFVPAYGRDVE-DMLRHGKVDLIPSFNMTYVDDRYFIHTGRYTDIQFGYI---- 345
             + L+F    +       DMLR G+ D+  +        R+   T  +    + ++    
Sbjct: 345  MTGLQFVHQESLSTQQSIDMLRAGQADMNTTLAENTERRRFLDFTYSFGGNSWMFVVRSD 404

Query: 346  ETTRPYTTPITG---ILDRTGKFNAYIAVQKNLSDVKVYRSMYDLEQALEKGDITHGLLN 402
             ++R     + G    L         I  +  L  +++  + YD  +AL +       + 
Sbjct: 405  HSSRISLDSLAGKVLALPARHALEDLIRREHPLIQLRLVNT-YDQARALVESGAADATIQ 463

Query: 403  KVLINQMLLDGHQDAFKLSPLTEGQDLRADMTMLVRKDARGLQNMLQKVLATFSQQEIDE 462
              +   +   G     K++   EGQ      +++  K    L  +L K L  F   E+  
Sbjct: 464  NEVGAYLFPSGE---LKVARSVEGQWSPDRFSVI--KTQPELLGILNKALEEFPVAELRS 518

Query: 463  IK-----GAYDRVTVYFGYDKQKVLIYALIILCALLSIGLILTLSLSRLRGKLRSSEQVA 517
            I+      A  + +++         + +L +L  L+S    LT S SRL+ ++R  ++  
Sbjct: 519  IRLKWLGSALPQPSLWARIPPWVFWVVSLALLTGLVS----LTWS-SRLKVQIRQRQRAQ 573

Query: 518  KLSTEQLRWLTELLDAIPSMIFISDAKGEVVLTNAAYRKIYHTCCEK------------- 564
            +   +QL +   LLD IP+ I++ D KG ++  N +Y +      E+             
Sbjct: 574  RQLNDQLAFKHALLDGIPNPIYVRDLKGRLISCNRSYEQSLGISFEQMNGRRLTDVNLIP 633

Query: 565  GCVQPQPECSFLALPDQHEAEFSI-IIQAPKSNCSIGEHYFHVTRRAISHPINQRKYYLT 623
              +  Q    +L L + H+  FS   I+ P     + +  + V   A      Q +  L 
Sbjct: 634  RALAEQMHTDYLNLLENHQPVFSDRTIELPGKRMDVWQ--WTVPFFAAD---GQLQGLLG 688

Query: 624  LFNDITELKETEQALRQSNEQALQAVEARNHFLAVVSHELRTPIAAMLGLMEI---LASR 680
             + DITE K+ EQ L+++   A QA EA++ FLA +SHE+RTP+ A++GL+E+    A R
Sbjct: 689  GWIDITERKQLEQQLQEATRLAAQANEAKSAFLASMSHEIRTPMGAIIGLLELECEQALR 748

Query: 681  LKSSESQLLLTNAISSAERLKLHVNDILDFSKIEAQQLQLDIGLYNLADELGPLLRGFEA 740
            L +  SQ L     S+ E + L + + LD ++IEA  +QL + + +L      ++  F A
Sbjct: 749  LGTMPSQGLQVAHRSATELVAL-IGESLDLARIEAGGMQLSLAVTSLQGLFDGVIELFSA 807

Query: 741  SAQLKEIEFDVIWSPNSLLLANFDALRFNQIVTNLLSNAIKFTDQGRVVFKIDV---APE 797
             A+ K +E  + +S  +      D LR  Q++ N+L NA+KFT QG VV ++DV   +PE
Sbjct: 808  QAREKGVELRLEFSAQARGDYWLDPLRLRQVLHNVLGNALKFTRQGAVVVRLDVTSDSPE 867

Query: 798  M--LTIVVEDTGCGMTQTQIESLFVPFAQADSTITRRFGGTGLGMSIVANLIELMNGKIE 855
               + I ++D+G G+   + + +F PF QA+      +GG+GLG+SI   L+ELM G I 
Sbjct: 868  STRVRIGIQDSGEGIDPQRQQQVFQPFTQANDDTAAHYGGSGLGLSITRQLVELMRGDIS 927

Query: 856  VKSEFEQGTQIQVNLPLVTQTCDEFRGQVVAMSYRSPYMLWAKALGMRVEENEEWVEQSG 915
            + SE  +GT + ++LPL                              RV E         
Sbjct: 928  LHSEPGKGTLVTIDLPLT-----------------------------RVSE--------- 949

Query: 916  HNIYPDLLLNRLREVSNLTQAQTEPAHSRLLQGHVLVADDDAINRLLIKKQLSELGLSAT 975
                       +    ++T A   P  +R L  H+LV DD + NRL++ +QL  LG   T
Sbjct: 950  ----------PVLPADDVTDA---PVDTRSL--HLLVVDDMSANRLVLTRQLEFLGHQVT 994

Query: 976  LVSDGLQAFEKLSQHPEQYDLLITDCHMPHLDGFALT---RKVKQEISLFKGAVVGCTAE 1032
             V DG  A     +    +D +ITDC+MP + G+ALT   R+++++    +  V+GCTA 
Sbjct: 995  AVEDGKAALSNWCE--GAFDAVITDCNMPGISGYALTQAIRQIEEKEQRQRCPVIGCTAN 1052

Query: 1033 DSRLAAEQALQAGMDKVIYKPYTLANLRKVLSRYLTTQWVALPEQSWLDAYQEEEREEMA 1092
                 A +  QAGMD ++ KP +LA L + L+  +      +     +     ++ + + 
Sbjct: 1053 AMSDEAARCEQAGMDGLLIKPLSLARLAQELADRVREPTFDIGTLQAMTQANPQQMQRLL 1112

Query: 1093 MVVAESLAQDIALLNQPDCDVK------ALAHRIKGAAGSLQLQRLA 1133
              + ++L  + ALL +P           A  HR+KGAA  +    LA
Sbjct: 1113 SELWKNLRHEHALL-EPAVSANDWKTLGACLHRLKGAASLVDAVPLA 1158