Pairwise Alignments

Query, 1176 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056

Subject, 977 a.a., periplasmic sensor hybrid histidine kinase from Synechococcus elongatus PCC 7942

 Score =  162 bits (410), Expect = 1e-43
 Identities = 154/550 (28%), Positives = 254/550 (46%), Gaps = 75/550 (13%)

Query: 631  LKETEQALRQSNEQALQAVEARNHFLAVVSHELRTPIAAMLGLMEILASRLKSS-ESQLL 689
            L+ET   L Q+ EQA  A +A++ FLA +SHELRTP+ A++G  E++    +   E + L
Sbjct: 457  LRETNDRLEQAREQAEAANQAKSAFLANMSHELRTPLNAIIGYSEMMMEEAEDGIEVEEL 516

Query: 690  LTN--AISSAERLKLH-VNDILDFSKIEAQQLQLDIGLYNLADELGPLLRGFEASAQLKE 746
            L +   I++A +  L  +N ILD SKIEA +++L +  ++L + +  +    +   +  +
Sbjct: 517  LPDFRKINNAGKHLLELINSILDLSKIEAGRMELYLESFSLPELINGVKSIIKPLIEKNQ 576

Query: 747  IEFDVIWSPNSLLLANFDALRFNQIVTNLLSNAIKFTDQGRVVFKIDVAPEMLTIVVEDT 806
             +  ++  P  + L   D  +  Q + NLLSNA KFT QG +  ++    + +   V D+
Sbjct: 577  NQL-LVDCPADIGLMTADVTKLRQTLLNLLSNASKFTHQGTIQLQVAAQGDQVVFKVVDS 635

Query: 807  GCGMTQTQIESLFVPFAQADSTITRRFGGTGLGMSIVANLIELMNGKIEVKSEFEQGTQI 866
            G GM+  QI+ +F  FAQAD + TR+FGGTGLG+SI  + IE+M GKI V+S   +G+  
Sbjct: 636  GIGMSPEQIDRIFEAFAQADDSTTRKFGGTGLGLSISRHFIEMMGGKITVESVLGEGSTF 695

Query: 867  QVNLPLVTQTCDEFRGQVVAMSYRSPYMLWAKALGMRVEENEEWVEQSGHNIYPDLLLNR 926
             + LP   Q                                     QS   + P +L + 
Sbjct: 696  TITLPRQVQP-----------------------------------PQSIPAVDP-VLTDE 719

Query: 927  LREVSNLTQAQTEPAHSRLLQGHVLVADDDAINRLLIKKQLSELGLSATLVSDGLQAFEK 986
                +   + Q +P         VLV DD+   R L+++ L + G      + G +  ++
Sbjct: 720  AIATATEQEDQNQPV--------VLVVDDEPSARELLRRMLEKEGYRVVTAAGGAEGLQR 771

Query: 987  LSQHPEQYDLLITDCHMPHLDGFALTRKVKQEISLFKGAVVGCTAEDSRLAAEQALQAGM 1046
              +   +  L+  D  MP +DG+++   +K +  L +  VV  +  + R     +   G 
Sbjct: 772  AQE--LRPALITLDLMMPQVDGWSVLTALKADPMLAEIPVVMVSMVEGR---SLSYALGA 826

Query: 1047 DKVIYKPYTLANLRKVLSRYL--TTQWVAL-----PEQSWL-------DAYQ--EEEREE 1090
               ++KP     LR++L RY     Q +AL     P    L       D +Q  E  + +
Sbjct: 827  ADYLHKPIDRDQLRRILERYTHPDRQPLALVIEDDPVNRSLLRQLLERDGWQVAEANQGQ 886

Query: 1091 MAMVVAESLAQ--DIALLN--QPDCDVKALAHRIKGAAGSLQLQRLADLAKTVEKQNDPQ 1146
              + V ESL Q  D+ LL+   P  D  A    ++       L  +   AK + +Q D Q
Sbjct: 887  QGLAVLESLEQPPDLILLDLMMPQMDGFAFVDALRANGNWQTLPVIVVTAKDLTEQ-DRQ 945

Query: 1147 QLVADKQQLI 1156
            +L     Q+I
Sbjct: 946  RLQGRVSQVI 955



 Score = 49.3 bits (116), Expect = 2e-09
 Identities = 31/102 (30%), Positives = 48/102 (47%)

Query: 951  LVADDDAINRLLIKKQLSELGLSATLVSDGLQAFEKLSQHPEQYDLLITDCHMPHLDGFA 1010
            LV +DD +NR L+++ L   G      + G Q    L    +  DL++ D  MP +DGFA
Sbjct: 856  LVIEDDPVNRSLLRQLLERDGWQVAEANQGQQGLAVLESLEQPPDLILLDLMMPQMDGFA 915

Query: 1011 LTRKVKQEISLFKGAVVGCTAEDSRLAAEQALQAGMDKVIYK 1052
                ++   +     V+  TA+D      Q LQ  + +VI K
Sbjct: 916  FVDALRANGNWQTLPVIVVTAKDLTEQDRQRLQGRVSQVIAK 957