Pairwise Alignments

Query, 1176 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1287 a.a., signal transduction histidine kinase-like protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  169 bits (428), Expect = 1e-45
 Identities = 148/515 (28%), Positives = 249/515 (48%), Gaps = 81/515 (15%)

Query: 621  YLTLFNDITELKETEQALRQSNEQALQAVEARNHFLAVVSHELRTPIAAMLGLMEILASR 680
            YL +  D+TE  + EQ L  + EQALQA  A++ FLA +SHE+RTP+ A+LGL+++    
Sbjct: 506  YLGIAYDLTEQLKREQELADAREQALQASRAKSDFLANMSHEIRTPMNAVLGLLQMTLQT 565

Query: 681  LKSSESQLLLTNAISSAERLKLHVNDILDFSKIEAQQLQLDIGLYNLADELGPLLRGFEA 740
                  +  L     +A+ L   +NDILDFSKIEA +++L+   ++L   LG +     +
Sbjct: 566  ELPPRPRDYLEKTQQAAKSLLALLNDILDFSKIEAGRIELERQGFSLQQLLGDMGSILSS 625

Query: 741  SAQLKEIEFDVIWSPNSLLLANFDALRFNQIVTNLLSNAIKFTDQGRVVFKIDV-----A 795
              Q K+IE     +P+       D+LR  QI+ N+L+NAIKFT++G ++ +ID       
Sbjct: 626  QVQQKDIELVYQVAPSVPDQLIGDSLRLRQILLNVLTNAIKFTEKGDIITRIDADLGDDG 685

Query: 796  PEMLTIVVEDTGCGMTQTQIESLFVPFAQADSTITRRFGGTGLGMSIVANLIELMNGKIE 855
               L I ++D+G GMT  Q   +F  F+QADS+I+RR+GGTGLG++I   L+ LM G+I 
Sbjct: 686  TCHLHIEIQDSGIGMTNEQQAIIFKGFSQADSSISRRYGGTGLGLAITRELVHLMQGEIR 745

Query: 856  VKSEFEQGTQIQVNLPLVTQTCDEFRGQVVAMSYRSPYMLWAKALGMRVEENEEWVEQSG 915
            V S    G+   +++ L                  + Y   A+  G+RV   E+    + 
Sbjct: 746  VTSSPGVGSTFTIDVQLGFDA--------------TKYRPGARFSGVRVLLVED--NHTS 789

Query: 916  HNIYPDLLLNRLREVSNLTQAQTEPAHSRLLQGHVLVADDDAINRLLIKKQLSELGLSAT 975
              ++ +LL +   EV+ L                                     GL+A 
Sbjct: 790  RLVFSELLRDLGCEVTALNN-----------------------------------GLTA- 813

Query: 976  LVSDGLQAFEKLSQHPEQYDLLITDCHMPHLDGFALTRKVKQEISLFK--GAVVGCTAED 1033
                 ++  E+++  P+ +D+L+ D  +P LDG  L   ++   SL +  G ++      
Sbjct: 814  -----MKTIERMA--PDSFDVLLADWQLPGLDGLELASWIRHLDSLSRQPGIIIVTAFSQ 866

Query: 1034 SRLAAE-QALQAGMDKVIYKPYTLANLRKVLSRYLTTQWVALPEQSWLDAYQEEEREEMA 1092
            + L A+ +  +   D  + KP T    R+++SR L         QS L+ +  +  + ++
Sbjct: 867  AMLEAQLKHREEEFDATLIKPVT----REMVSRCL---------QSVLERHNNDGLDMLS 913

Query: 1093 -MVVAESLAQDIALLNQPDCDVKALAHRIKGAAGS 1126
             + +A SL     LL + +   + +A  + G  G+
Sbjct: 914  HLPLAPSLVGRRLLLVEDNATNRLVATSLLGQLGA 948



 Score = 70.9 bits (172), Expect = 7e-16
 Identities = 41/129 (31%), Positives = 68/129 (52%), Gaps = 2/129 (1%)

Query: 940  PAHSRLLQGHVLVADDDAINRLLIKKQLSELGLSATLVSDGLQAFEKLSQHPEQYDLLIT 999
            P    L+   +L+ +D+A NRL+    L +LG       DG QA + LS+  +Q+DL++ 
Sbjct: 916  PLAPSLVGRRLLLVEDNATNRLVATSLLGQLGAEVIEAVDGFQALKLLSR--QQFDLVLM 973

Query: 1000 DCHMPHLDGFALTRKVKQEISLFKGAVVGCTAEDSRLAAEQALQAGMDKVIYKPYTLANL 1059
            D  MP +DG+  TRK++ E+ L    ++  TA       +    AGM+  I KP+ +  +
Sbjct: 974  DIQMPGMDGYQTTRKIRNELMLTDLPIIAMTANAMPEDKQACRDAGMNCHISKPFEIDEV 1033

Query: 1060 RKVLSRYLT 1068
               L +YL+
Sbjct: 1034 ATKLLQYLS 1042