Pairwise Alignments

Query, 1176 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1021 a.a., signal transduction histidine kinase-like protein protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  155 bits (391), Expect = 2e-41
 Identities = 121/368 (32%), Positives = 189/368 (51%), Gaps = 28/368 (7%)

Query: 630 ELKETEQALRQSNEQALQAVEARNHFLAVVSHELRTPIAAMLGLMEILASRLKSSESQLL 689
           EL+     L ++ E+A  A   +  FLA +SHE+RTP+  +LG++ +L     S + +  
Sbjct: 375 ELEHKNADLVEAREKAEAASRIKADFLACMSHEIRTPMNGVLGILSLLEKTELSIQQKHY 434

Query: 690 LTNAISSAERLKLHVNDILDFSKIEAQQLQLDIGLYNLADELGPLLRGFEASAQLKEIEF 749
           L  A +SAE L   +NDILDFSKIE+ + ++D   ++L   L   ++ F   A+ K ++ 
Sbjct: 435 LDVASTSAESLLTLLNDILDFSKIESGKFEIDEVPFDLIQLLDDFIQPFAIRAEAKGLKL 494

Query: 750 DVIWSPNSLLLANFDALRFNQIVTNLLSNAIKFTDQGRVVFKIDVAPE-----MLTIVVE 804
            +  S   L     D  R  Q++ NL+SNAIKFT+ G +  ++  + +      L + +E
Sbjct: 495 LLDISGIHLRWVRGDPGRIRQVLVNLVSNAIKFTEVGWIAVRVQASEDTANGVSLMVSIE 554

Query: 805 DTGCGMTQTQIESLFVPFAQADSTITRRFGGTGLGMSIVANLIELMNGKIEVKSEFEQGT 864
           DTG G+++ + E LF PF QADST TR FGGTGLG+SI   L ELM+G I V S  + G+
Sbjct: 555 DTGIGISKDKQEVLFSPFTQADSTTTRHFGGTGLGLSIAKRLCELMDGDIRVISAEDAGS 614

Query: 865 QIQVNLPLVTQTCDEFRGQVVAMSYRSPYMLWAKALG----MRVEENEEWVEQSGHNIYP 920
             + +L L ++          A++ R+P  L A  LG    M  E  + W       + P
Sbjct: 615 TFKFHLRLKSEAASGAEWP-PALNCRAP--LLAGELGASERMLFELLDSW------QLRP 665

Query: 921 DLLLN--RLREVSNLTQAQ----TEPAH----SRLLQGHVLVADDDAINRLLIKKQLSEL 970
            LL +   L +   L  A     + P H    ++ LQ     A +  +  L I     ++
Sbjct: 666 ALLESNTELAQTPALAAADWLIYSVPEHLVSITQELQKMAAFATEKGLKFLAIISHRQQI 725

Query: 971 GLSATLVS 978
           GL+ T++S
Sbjct: 726 GLAPTILS 733



 Score = 85.9 bits (211), Expect = 2e-20
 Identities = 72/245 (29%), Positives = 120/245 (48%), Gaps = 29/245 (11%)

Query: 950  VLVADDDAINRLLIKKQLSELGLS-ATLVSDGLQAFEKLSQHPEQYDLLITDCHMPHLDG 1008
            +L+ +D+ +N+++    L  LGL    +V++GLQA   L QH  QYDL++ DC MP +DG
Sbjct: 775  ILLVEDNKVNQMVALGMLRNLGLKHVEVVTNGLQALAAL-QH-RQYDLILMDCLMPEMDG 832

Query: 1009 FALTRKVKQEISLFKG---AVVGCTAEDSRLAAEQALQAGMDKVIYKPYTLANLRKVLSR 1065
            +  T+ +++  +  K     +V  TA   +   E  L+AGM+  I KP   A + +VL R
Sbjct: 833  YQATQAIRKGEAGQKHKDIKIVAMTANAMKGDRETCLEAGMNDYIAKPLHQAEVARVLER 892

Query: 1066 YLTTQWVALPEQSWLDA---------------YQEEEREEMAMVVAESLAQ-----DIAL 1105
            Y+     +    + L A                  E   ++  V AE +A      + A+
Sbjct: 893  YIPLDSTSCAPSNPLSADTLLFDRHCALELMSGDSELLGDILKVFAEEMAVYLEAFESAM 952

Query: 1106 LNQPDCDVKALAHRIKGAAGSLQLQRLADLAKTVE---KQNDPQQLVADKQQLINAMHEV 1162
              +    V+   H IKGAAG+L +  LA +AK +E   ++ D   L A + + I+ +   
Sbjct: 953  GRRDFAAVRTAVHAIKGAAGNLCMSPLAGVAKEMEMAARRLDWVYLEAHQAEFIDVLRRT 1012

Query: 1163 VEQAQ 1167
            +EQ+Q
Sbjct: 1013 LEQSQ 1017