Pairwise Alignments

Query, 1176 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1230 a.a., PAS/PAC sensor hybrid histidine kinase (RefSeq) from Shewanella loihica PV-4

 Score =  153 bits (387), Expect = 7e-41
 Identities = 101/255 (39%), Positives = 147/255 (57%), Gaps = 7/255 (2%)

Query: 616 NQRKYYLTLFNDITELKETEQALRQSNEQALQAVEARNHFLAVVSHELRTPIAAMLGLME 675
           NQ K  +    DIT  K  E AL ++ + A  A   ++ FLA +SHE+RTP+ A++G+++
Sbjct: 686 NQPKRMVGTHKDITRHKSNEVALLEAKQDAESANLYKSEFLANMSHEIRTPMNAIIGMLQ 745

Query: 676 ILASRLKSSESQL-LLTNAISSAERLKLHVNDILDFSKIEAQQLQLDIGLYNLADELGPL 734
            LASR + +  Q   L  A  SA+ L   +NDILDFSKIEA +L+L+   + L   L   
Sbjct: 746 -LASRTQLTPQQADYLDKAGFSAQSLLRIINDILDFSKIEAGKLELERVAFPLDKVLDHA 804

Query: 735 LRGFEASAQLKEIEFDVIWSPNSLLLANFDALRFNQIVTNLLSNAIKFTDQGRVVFKIDV 794
           L      AQ K +E  +     + L+   D LR  Q++ N+LSNA+KFT  G +    + 
Sbjct: 805 LDLNALKAQEKGVELLLYAPVTAGLILEGDPLRLGQVLINMLSNAVKFTQSGEIELGCED 864

Query: 795 APE-----MLTIVVEDTGCGMTQTQIESLFVPFAQADSTITRRFGGTGLGMSIVANLIEL 849
             E      L   V DTG G+++ Q ESLF  FAQAD + TR++GGTGLG+SI  +L+ +
Sbjct: 865 VGERDHRITLKFWVRDTGIGISKEQQESLFDAFAQADGSTTRKYGGTGLGLSISKHLVSM 924

Query: 850 MNGKIEVKSEFEQGT 864
           M G ++V+SE   G+
Sbjct: 925 MGGTMQVQSELGVGS 939



 Score = 55.5 bits (132), Expect = 3e-11
 Identities = 32/120 (26%), Positives = 62/120 (51%), Gaps = 2/120 (1%)

Query: 948  GHVLVADDDAINRLLIKKQLSELGLSATLVSDGLQAFEKLSQHPEQYDLLITDCHMPHLD 1007
            G +L+ +D+ IN+ +  + L   G    +  +G  A + +    +QYD ++ D  MP +D
Sbjct: 1110 GQILLVEDNFINQQVATELLKSAGYEVDVAENGQVALDMVDA--KQYDAVLMDIQMPVMD 1167

Query: 1008 GFALTRKVKQEISLFKGAVVGCTAEDSRLAAEQALQAGMDKVIYKPYTLANLRKVLSRYL 1067
            G   T+++++  +  +  V+  TA       E++L AGM+  I KP  L  L   L++++
Sbjct: 1168 GLTATKELRKRYTKEELPVIAMTAHAMSGDREKSLAAGMNAHITKPIVLNELFDTLAQWI 1227