Pairwise Alignments

Query, 1176 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1047 a.a., PAS domain S-box from Dechlorosoma suillum PS

 Score =  173 bits (438), Expect = 8e-47
 Identities = 134/437 (30%), Positives = 209/437 (47%), Gaps = 58/437 (13%)

Query: 621  YLTLFNDITELKETEQALRQSNEQALQAVEARNHFLAVVSHELRTPIAAMLGLMEILASR 680
            +L LF DITE K  E  L+Q+ E A  A  A+  FLA +SHE+RTP+  +LG+ ++    
Sbjct: 505  HLWLFRDITERKHAELELQQAKEAAESANRAKGEFLANMSHEIRTPMNGILGMTDLALDS 564

Query: 681  LKSSESQLLLTNAISSAERLKLHVNDILDFSKIEAQQLQLDIGLYNLADELGPLLRGFEA 740
              + E +  L    SSA+ L + +NDILDFSKIEA +L+L+   ++L   L   L+  E 
Sbjct: 565  ALTPEQRDYLEMVKSSADALLVIINDILDFSKIEAGKLELEHIHFHLRQLLRETLKPLEL 624

Query: 741  SAQLKEIEFDVIWSPNSLLLANFDALRFNQIVTNLLSNAIKFTDQGRVVFKIDVAPEMLT 800
             A+ + +                D  R  Q++ NL+ NAIKFT++G+V  +++    +L 
Sbjct: 625  RARQRSLTLRCEVPEEVADGYLGDPGRLRQVLINLVGNAIKFTEEGQVAVRVEARDGLLH 684

Query: 801  IVVEDTGCGMTQTQIESLFVPFAQADSTITRRFGGTGLGMSIVANLIELMNGKIEVKSEF 860
              V DTG G+   + + +F  F+QADS++TRRFGGTGLG++I   L+ LM G + V+S+ 
Sbjct: 685  FAVSDTGIGIPADKQQLIFEAFSQADSSVTRRFGGTGLGLTICTRLVRLMGGHMWVESDP 744

Query: 861  EQGTQIQVNLPLVTQTCDEFRGQVVAMSYRSPYMLWAKALGMRVEENEEWVEQSGHNIYP 920
             QG+               F  ++ A++  +              E+ E     G  + P
Sbjct: 745  GQGSTF------------HFTARLEAVAGPA--------------ESGEADAGRGEVVLP 778

Query: 921  DLLLNRLREVSNLTQAQTEPAHSRLLQGHVLVADDDAINRLLIKKQLSELGLSATLVSDG 980
             L          L  A+  P + +                 L+   L + G   TL  +G
Sbjct: 779  PL---------RLLVAEDNPVNQK-----------------LVLTLLQKRGHRVTLADNG 812

Query: 981  LQAFEKLSQHPEQYDLLITDCHMPHLDGFALTRKVK-QEISLFKG---AVVGCTAEDSRL 1036
             QA   L+   + +DL++ D  MP + G   TR+++  E +   G    +V  TA     
Sbjct: 813  QQALAALA--TDHFDLVLMDMQMPVMGGLEATRRIRAAEAARGDGQHLPIVAMTANAMAG 870

Query: 1037 AAEQALQAGMDKVIYKP 1053
              E  L+AGMD  + KP
Sbjct: 871  DRELCLEAGMDGYVSKP 887



 Score = 27.7 bits (60), Expect = 0.005
 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 3/54 (5%)

Query: 499 LTLSLSRLRGKLRSSEQVAKLSTEQLRWLTELLDAIPSMIFISDAKGEVVLTNA 552
           L  +L+R   +L+  E+  +   E  R+L  L DA+   +  +DA+G     NA
Sbjct: 238 LVQALNRASRRLKQQEETIE---ENSRFLQSLTDALGEGVIATDAEGRCTFINA 288