Pairwise Alignments

Query, 1176 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1288 a.a., PAS domain S-box from Dechlorosoma suillum PS

 Score =  156 bits (394), Expect = 1e-41
 Identities = 89/246 (36%), Positives = 139/246 (56%)

Query: 627 DITELKETEQALRQSNEQALQAVEARNHFLAVVSHELRTPIAAMLGLMEILASRLKSSES 686
           DITE ++ +     + E A Q    ++ FLA +SHE+RTP+ A+LG  ++       S +
Sbjct: 645 DITERRQADATREAAREAAEQLARIKSEFLANMSHEIRTPLNAILGFAQLGQRETPESRA 704

Query: 687 QLLLTNAISSAERLKLHVNDILDFSKIEAQQLQLDIGLYNLADELGPLLRGFEASAQLKE 746
           ++       + + L   +NDILDFSKIEA +++L++   N  + +  +++   AS   K 
Sbjct: 705 RIGFQRIHDAGQHLLGIINDILDFSKIEAGKMKLEMQPTNPCEVVDHVVKLMAASVFQKG 764

Query: 747 IEFDVIWSPNSLLLANFDALRFNQIVTNLLSNAIKFTDQGRVVFKIDVAPEMLTIVVEDT 806
           +E  V  S N     + D+LR  Q++ NLL NA+KFTDQG +  + +   + L   + DT
Sbjct: 765 LELRVEESDNLPAAFDGDSLRLAQVLLNLLGNALKFTDQGSITLREERDGQDLIYSIRDT 824

Query: 807 GCGMTQTQIESLFVPFAQADSTITRRFGGTGLGMSIVANLIELMNGKIEVKSEFEQGTQI 866
           G GM + Q+  LF  F Q     +RRFGGTGLG++I   L+E+M G IEV+S   QGT  
Sbjct: 825 GIGMNREQLGRLFHAFEQGHGGASRRFGGTGLGLTITKRLVEMMGGSIEVESTPGQGTCF 884

Query: 867 QVNLPL 872
            + +P+
Sbjct: 885 SIRIPM 890



 Score = 68.2 bits (165), Expect = 4e-15
 Identities = 41/131 (31%), Positives = 70/131 (53%), Gaps = 5/131 (3%)

Query: 950  VLVADDDAINRLLIKKQLSELGLSATLVSDGLQAFEKLSQH-PEQYDLLITDCHMPHLDG 1008
            +L+A+D+  NRL++++ L   G S   V +GL+A E L +  P+ + L +TD  MP +DG
Sbjct: 1023 ILIAEDNQANRLVLRELLESEGASIVCVENGLEAVETLQRRGPQDFQLFLTDVQMPVMDG 1082

Query: 1009 FALTRKVKQEISLFKGAVVGCTAEDSRLAAEQALQAGMDKVIYKPYTLANLRKVLSRYLT 1068
            +   R+V ++    +  ++G TA  +    +  L AGM   + KPY L  L + + R + 
Sbjct: 1083 YTAAREVSRQYP--ELPIIGVTANVTLEDRQNCLNAGMVDHVGKPYQLDALVEAILRVVR 1140

Query: 1069 TQWVALPEQSW 1079
            +   A P   W
Sbjct: 1141 SD--ARPSPLW 1149



 Score = 31.2 bits (69), Expect = 6e-04
 Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 7/50 (14%)

Query: 627 DITELKETEQALRQS-------NEQALQAVEARNHFLAVVSHELRTPIAA 669
           D++ELK+ EQALRQ+        ++  Q VE+R+  L      LR  IAA
Sbjct: 499 DVSELKQAEQALRQTQVELEQHRDKLEQLVESRSAELRASEARLRLAIAA 548