Pairwise Alignments

Query, 1176 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056

Subject, 858 a.a., PAS domain S-box from Dechlorosoma suillum PS

 Score =  170 bits (431), Expect = 4e-46
 Identities = 139/474 (29%), Positives = 222/474 (46%), Gaps = 58/474 (12%)

Query: 600  GEHYFHVTRRAISHPINQRKYYLTLFNDITELKETEQALRQSNEQALQAVEARNHFLAVV 659
            GE ++        +P +  +  +  F D+TE K  E  LR + E+A  A  A++ FLA +
Sbjct: 302  GECFWCAVSGKAINPDDLSRGVVWTFEDVTERKAAESELRHAREKAEAANRAKSEFLANM 361

Query: 660  SHELRTPIAAMLGLMEILASRLKSSESQLLLTNAISSAERLKLHVNDILDFSKIEAQQLQ 719
            SHE+RTP   +LG++++L     + + +  +  A  S ++L   +NDILD SKIEA +L 
Sbjct: 362  SHEIRTPFTGILGVLDLLLHTPLNEKQERYIRLAYGSTKQLLAILNDILDISKIEAGKLV 421

Query: 720  LDIGLYNLADELGPLLRGFEASAQLKEIEFDVIWSPNSLLLANFDALRFNQIVTNLLSNA 779
            +     +L   LG L     A+A  K +EF            + D +R  QI+ NLL+NA
Sbjct: 422  IHPEEVDLVLLLGELTEVQAAAAAQKGLEFRYHIKGIIPPKIHGDPVRLRQIMANLLNNA 481

Query: 780  IKFTDQGRVVFKID---VAP--EMLTIVVEDTGCGMTQTQIESLFVPFAQADSTITRRFG 834
            IKFT+ G V   I+   +AP  + L + V D+G G+     E++F  F QADS+ TR FG
Sbjct: 482  IKFTNSGWVELDIECTRIAPGRQHLRVEVRDSGIGVPPELQETIFDKFTQADSSTTRLFG 541

Query: 835  GTGLGMSIVANLIELMNGKIEVKSEFEQGTQIQVNLPLVTQTCDEFRGQVVAMSYRSPYM 894
            GTGLG++I   L+ELM+G I V S   +G+    ++ L                      
Sbjct: 542  GTGLGLTICKQLVELMHGSIGVSSNSGEGSCFWFDIEL---------------------- 579

Query: 895  LWAKALGMRVEENEEWVEQSGHNIYPDLLLNRLREVSNLTQAQTEPAHSRLLQGHVLVAD 954
                              +S   + P  +L     ++ L      P  +R+     L+ D
Sbjct: 580  -----------------PESDPTVSPVPVLPAGSPITAL------PRDTRI-----LLVD 611

Query: 955  DDAINRLLIKKQLSELGLSATLVSDGLQAFEKLSQHPEQYDLLITDCHMPHLDGFALTRK 1014
            D   NR ++ + L++        ++GL+A         Q D ++ DC M  +DG+  TR+
Sbjct: 612  DTEANREVLAEYLAQAHCQVRQAANGLEAVTLAESW--QPDAILMDCQMAGMDGYEATRQ 669

Query: 1015 VK-QEISLFKGAVVGCTAEDSRLAAEQALQAGMDKVIYKPYTLANLRKVLSRYL 1067
            ++ QE    +  ++  TA   R   E+ L AGMD  + KP     L   + ++L
Sbjct: 670  IRIQEGQRRRTPIIALTAFVMRGDREKCLAAGMDDYLPKPVDAQTLIATIGKWL 723



 Score = 63.2 bits (152), Expect = 9e-14
 Identities = 44/135 (32%), Positives = 64/135 (47%), Gaps = 4/135 (2%)

Query: 937  QTEPAHSRLLQGHVLVADDDAINRLLIKKQLSELGLSATLVSDGLQAFEKLSQHPE-QYD 995
            +T PA +    G +L+ DD+   R      L  LG      S G +A   L   PE  +D
Sbjct: 727  ETNPARTPRFSGRILLVDDNPEIREASTCLLEALGCQVQSASSGEEA---LQLGPEADFD 783

Query: 996  LLITDCHMPHLDGFALTRKVKQEISLFKGAVVGCTAEDSRLAAEQALQAGMDKVIYKPYT 1055
            L++ DC MP LDG A TR  +        A++  TA D   +  Q  +AGM+  + KP++
Sbjct: 784  LVLMDCRMPGLDGCATTRAWRARERGTPTAIIALTAGDPDESRAQCREAGMNDFLAKPFS 843

Query: 1056 LANLRKVLSRYLTTQ 1070
               L  +L R+L  Q
Sbjct: 844  EQELVTLLRRWLAPQ 858