Pairwise Alignments

Query, 1176 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056

Subject, 839 a.a., PAS domain S-box from Dechlorosoma suillum PS

 Score =  176 bits (447), Expect = 5e-48
 Identities = 214/876 (24%), Positives = 351/876 (40%), Gaps = 141/876 (16%)

Query: 254  PVVRYTIQDDLFPMSYWDEKEKKYKGYVHDLLERISTKSILKFEFVPAYGRDVEDMLRHG 313
            P +R T  DD +P   + +   +  GY+ DL      K+  + + +       + ++   
Sbjct: 35   PPLRVT-SDDNYPPYIFRDPSGQPVGYLVDLWSLWEQKTGRRVQLIATDWGRAQRLMAEN 93

Query: 314  KVDLIPSFNMTYVDDRYFIHTGRYTDIQFGYIETTRPYTTPITGILDRTGKFNAYIAVQ- 372
            + D+I     T   D  +  +  Y ++  G    +      I+GI +        I VQ 
Sbjct: 94   EADVIDMIFHTAARDALYEFSQPYANLPVGIYSHSS-----ISGISNTDNLKGFLIGVQV 148

Query: 373  ----------KNLSDVKVYRSMYDLEQALEKGDITHGLLNKVLINQML--LDGHQDAFKL 420
                      K +++++ +++  ++  A    +I    L+++  N  L  LD  +   K 
Sbjct: 149  GDACIEELQGKGVTNLRQFKNYAEMIAAAMAEEIKLFCLDQLPANYYLYRLDLQRQFRKS 208

Query: 421  SPLTEGQDLRADMTMLVRKDARGLQNMLQKVLATFSQQEIDEIK-----GAYDRVTVYFG 475
              L +G+  RA      RK        +++ +A  S +E   ++      A D V  Y  
Sbjct: 209  FDLYQGRFHRA-----TRKGDTATLAAVERGMALISNEERAALEKKWMGSAIDYVP-YMP 262

Query: 476  YDKQKVLIYALIILCALLSIGLILTLSLSRLRGKLRSSEQVAKLSTEQLRWLTELLDAIP 535
            Y +   L  AL+++      GL L + + +   K R++E        Q   L  LL  IP
Sbjct: 263  YARYFGLGLALLLVAGA---GLALWVRVLQAAVKRRTAEL-----ERQRSHLHTLLRGIP 314

Query: 536  SMIFISDAKGEVVLTNAAYRKIYHTCCEKGCVQPQPE---CSFLALPDQHEAEFS----- 587
              +++ D  G  +  N A+ ++          +P+ E   CS      + +A+F      
Sbjct: 315  DPLWLKDEAGVFIACNPAFERMMG--------RPEQEIIGCSDYDFVSREQADFFRDKDR 366

Query: 588  --IIIQAPKSN-------CSIGEHYFHVTRRAISHPINQRKYYLTLFNDITELKETE--- 635
              ++   P+SN          G+  F   +  I  P  +    L +  DITE K  E   
Sbjct: 367  QVLVAGTPQSNEEWITQADGSGQRLFETVKTPIVEPQGKVLGVLGVARDITERKRLEAEV 426

Query: 636  ---------------QALRQSNEQALQAVEARNHFLAVVSHELRTPIAAMLGLMEILASR 680
                           + L ++ + A  A  A++ FLA +SHE+RTP+ A++GL  IL   
Sbjct: 427  SNYSHHLEELVAERTEELARARDAANAANVAKSAFLANMSHEIRTPMNAIIGLTHILKKG 486

Query: 681  LKSSESQLLLTNAISSAERLKLHVNDILDFSKIEAQQLQLDIGLYNLADELGPLLRGFEA 740
              S + Q  L     +A  L   +NDILD SKIEA++L L+     L   +  +      
Sbjct: 487  EPSPQQQDRLDKIDDAASHLLSIINDILDLSKIEAERLVLEEQPVELGRIVSHIFSMLAE 546

Query: 741  SAQLKEIEFDVIWSPNSLLLANFDALRFNQIVTNLLSNAIKFTDQGRVVFKIDV-----A 795
             A+ K+I       P    L   D  R  Q + N  SNA+KFT+ G V  +I V     A
Sbjct: 547  GARKKDIVLKSEVDPLPPYLLG-DPTRLTQAILNYASNAVKFTEWGSVTLRIKVLELTPA 605

Query: 796  PEMLTIVVEDTGCGMTQTQIESLFVPFAQADSTITRRFGGTGLGMSIVANLIELMNGKIE 855
               L   VEDTG G+       LF PF QAD + +RRFGGTGLG+ I   L ++M G   
Sbjct: 606  DVFLRFEVEDTGIGIAPEVQPLLFAPFQQADGSTSRRFGGTGLGLVITRRLAQIMGGDAG 665

Query: 856  VKSEFEQGTQIQVNLPLVTQTCDEFRGQVVAMSYRSPYMLWAKALGMRVEENEEWVEQSG 915
            V S    G+                               W  A                
Sbjct: 666  VDSRLGFGSTF-----------------------------WFSAR--------------- 681

Query: 916  HNIYPDLLLNRLREVSNLTQAQTEPAHSRLLQGH----VLVADDDAINRLLIKKQLSELG 971
                  L L   R        + + A   LLQ +    +L+A+DD+IN+ + ++ L   G
Sbjct: 682  ------LKLGEARAALPEDGPRPDSAEGELLQHYRGTPILLAEDDSINQEVARELLEYAG 735

Query: 972  LSATLVSDGLQAFEKLSQHPEQYDLLITDCHMPHLDGFALTRKVKQEISLFKGAVVGCTA 1031
            L   + +DG +A   L +    Y L++ D  MP +DG   TR +++   +    ++  TA
Sbjct: 736  LRVDIAADGNEAVACLERGTTPYALVLMDMQMPGMDGLEATRHIRRLPGMESLPIISMTA 795

Query: 1032 EDSRLAAEQALQAGMDKVIYKPYTLANLRKVLSRYL 1067
                   E+ L+AGM+  + KP     L  +L ++L
Sbjct: 796  NAFGEDRERCLEAGMNDFVPKPVNPEVLYAMLLKWL 831