Pairwise Alignments

Query, 1176 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1306 a.a., PAS domain S-box from Dechlorosoma suillum PS

 Score =  161 bits (407), Expect = 4e-43
 Identities = 158/577 (27%), Positives = 259/577 (44%), Gaps = 74/577 (12%)

Query: 505  RLRGKLRSSEQVAKLSTEQLRWLTELLDAIPSMIFISDAKGEVVLTNAAYRKIYHTCCEK 564
            R+  + R      + S+ QL  L  ++D++P+ +F  DA+G  +  N AY   +     +
Sbjct: 422  RVEQRTRELADAREESSRQLVLLQAIMDSMPNPVFFKDAEGRFLGCNRAYEDTFGVGRGQ 481

Query: 565  GCVQPQPECSFLALPDQHEAEFSI-------IIQAPKSNCSIGEHYFHVT---RRAISHP 614
               +   E  FL+  ++ E +          I+   +      +   H T       S  
Sbjct: 482  IVGKTVRELPFLSEEEKQELQAVSEAIIRDGIMMHRELQLPFADGLRHDTLYWANGFSRE 541

Query: 615  INQRKYYLTLFNDITELKETEQALRQSNEQALQAVEARNHFLAVVSHELRTPIAAMLGLM 674
                   + +  DI+E K  E+ LR++   A +A EA++ FLA +SHE+RTP+ A++G+ 
Sbjct: 542  DGTPGGMVGVVVDISERKLMEEELRRARATAEEATEAKSLFLANMSHEIRTPMNAIIGMA 601

Query: 675  EILASRLKSSESQLLLTNAISSAERLKLHVNDILDFSKIEAQQLQLDIGLYNLADELGPL 734
             +      + + +  +    ++A  L   +NDILDFSKIEA +L L+   ++L D L  +
Sbjct: 602  HLAMKTELTPKQRDYVGKIHNAAISLLGIINDILDFSKIEAGKLSLEYVPFSLEDVLDNV 661

Query: 735  --LRGFEASAQLKEIEFDVIWSPNSLLLANFDALRFNQIVTNLLSNAIKFTDQGRVVFK- 791
              L G +A+ +  E+ F+V     + L+   D LR NQI+TNL+SNAIKFT++G++    
Sbjct: 662  SGLLGLKANEKGLELLFNVNAGTPAGLVG--DPLRLNQILTNLVSNAIKFTERGQITLTT 719

Query: 792  --IDVAPEMLTIV--VEDTGCGMTQTQIESLFVPFAQADSTITRRFGGTGLGMSIVANLI 847
              +D A + + +   +ED G GM++ Q+  LF  F QAD + TR++GGTGLG+SI   L+
Sbjct: 720  RPVDQAGDRVKLQFWIEDMGIGMSREQLLHLFQAFTQADGSTTRKYGGTGLGLSISRRLV 779

Query: 848  ELMNGKIEVKSEFEQGTQIQVNLPLVTQTCDEFRGQVVAMSYRSPYMLWAKALGMRVEEN 907
            E+M G I   S   +G+         T     + G+  A     P  L A   G+RV   
Sbjct: 780  EMMGGTIWADSTLGEGS---------TFCFTAWFGR--AEELARPRTLPASLAGLRV--- 825

Query: 908  EEWVEQSGHNIYPDLLLNRLREVSNLTQAQTEPAHSRLLQGHVLVADDDAINRLLIKKQL 967
                                        A    A   +L         +A+  L ++  L
Sbjct: 826  --------------------------LVADDNGAAREIL--------GEALRHLDLRPDL 851

Query: 968  SELGLSATLVSDGLQAFEKLSQHPEQYDLLITDCHMPHLDGFALTRKVKQEISLFK-GAV 1026
               G  A      L    ++    + Y +L  D  MP LDG +   K++Q +   +   V
Sbjct: 852  VASGAEA------LAQLTEMQGGADPYRVLFLDWQMPDLDGVSTLHKLQQALPQAQWPRV 905

Query: 1027 VGCTAEDSRLAAEQALQAGMDKVIYKPYTLANLRKVL 1063
            V  TA D      Q    G+  ++ KP + + L  VL
Sbjct: 906  VMVTAYDQEELRRQTENLGICGILVKPVSASTLFDVL 942



 Score = 67.0 bits (162), Expect = 1e-14
 Identities = 37/118 (31%), Positives = 63/118 (53%), Gaps = 1/118 (0%)

Query: 950  VLVADDDAINRLLIKKQLSELGLSATLVSDGLQAFEKLSQHPEQ-YDLLITDCHMPHLDG 1008
            +L+A+D+ IN+ +  + L  +G   T+  DGLQA E L + P+  +DL++ D  MPHLDG
Sbjct: 970  ILLAEDNEINQQIAVELLQSMGAQVTVAGDGLQAVELLERSPDDSFDLVLMDLQMPHLDG 1029

Query: 1009 FALTRKVKQEISLFKGAVVGCTAEDSRLAAEQALQAGMDKVIYKPYTLANLRKVLSRY 1066
            +  T +++ +       ++  TA       E+ L  GM+  + KP     L   L+R+
Sbjct: 1030 YDATERLRCQQRFAHLPILAMTAHAMPEERERCLAIGMNDHLAKPIDPTALAATLARW 1087