Pairwise Alignments

Query, 1176 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056

Subject, 571 a.a., histidine kinase (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  185 bits (470), Expect = 8e-51
 Identities = 168/589 (28%), Positives = 263/589 (44%), Gaps = 87/589 (14%)

Query: 499  LTLSLSRLRGKLRSSEQVAKLSTEQLRWLTELLDAIPSMIFISDAKGEVVLTNAAYRKI- 557
            L   ++RLRG     E+ A  S E  R L ++L +IP ++ + D   +VV +N     + 
Sbjct: 30   LEAEIARLRG-----ERDAARSAE--RTLRDILTSIPDLLTVHDRAEQVVFSNWQGDNVR 82

Query: 558  -------YHTCCEKGCV-QPQPECSFLALPDQHEAEFSIIIQAPKSNCSIGEHYFHVTRR 609
                    H     GC  + +  C    + +  +     II+    +      +  +T  
Sbjct: 83   WETQGGDQHGRSCFGCYFRGEKSCDACQIAEVFDTGRQKIIELYNPD---SRTFRSITVF 139

Query: 610  AISHPINQRKYYLTLFNDITELKETEQALRQSNEQALQAVEARNHFLAVVSHELRTPIAA 669
             + +   Q         D+TE +  E+ LR + E A  A +A++ FLA +SHE+RTP+  
Sbjct: 140  PVRNAAGQVAMVAEYVRDVTETRRMERELRVAKEAAEAADKAKSEFLASMSHEIRTPMNG 199

Query: 670  MLGLMEILASRLKSSESQLLLTNAISSAERLKLHVNDILDFSKIEAQQLQLDIGLYNLAD 729
            +LG++++        E +  L  A +SAE L   +NDILDFSKIEA  ++LD  ++ L  
Sbjct: 200  VLGMLDLALDTPLDEEQREYLEAAQNSAESLLALINDILDFSKIEAGMVELDSQVFRLRK 259

Query: 730  ELGPLLRGFEASAQLKEIEFDVI---WSPNSLLLANFDALRFNQIVTNLLSNAIKFTDQG 786
             L  L   F   A+ K + F  +     P+ L+    D +R  Q++ NLL NA+KFT+ G
Sbjct: 260  RLSTLHTMFVHRAEEKGLGFAFLVPEGVPDGLV---GDPMRLRQVLVNLLDNALKFTEAG 316

Query: 787  RV---VFKIDVAPE--MLTIVVEDTGCGMTQTQIESLFVPFAQADSTITRRFGGTGLGMS 841
            RV   V  +   PE  +L   V D+G G+     E +F  F QAD +++RR  GTGLG++
Sbjct: 317  RVSLAVRTVQATPESMLLEFSVTDSGPGILDKHREHIFERFVQADGSLSRRHKGTGLGLA 376

Query: 842  IVANLIELMNGKIEVKSEFEQGTQIQVNLPLVTQTCDEFRGQVVAMSYRSPYMLWAKALG 901
            I   L  LM G I V S   QG                           S +   A+   
Sbjct: 377  ICKRLALLMGGDIRVDSAPGQG---------------------------STFHFTARFAT 409

Query: 902  MRVEENEEWVEQSGHNIYPDLLLNRLREVSNLTQAQTEPAHSRLLQGHVLVADDDAINRL 961
             R+E  E                      +     QT     R     +LVA+D  +N +
Sbjct: 410  ARLEGEE----------------------AARAPVQTPEPECR---ARILVAEDHPMNLM 444

Query: 962  LIKKQLSELGLSATLVSDGLQAFEKLSQHPEQYDLLITDCHMPHLDGFALTRKVKQEISL 1021
             I+K L + G     V+DG +    L +  +++DL++ D  MP +DG   TR V++   +
Sbjct: 445  FIEKFLQKQGYEVQSVTDGSEVVPALRK--QEFDLVLMDIAMPVMDGMEATRMVRKAQGM 502

Query: 1022 FKGA---VVGCTAEDSRLAAEQALQAGMDKVIYKPYTLANLRKVLSRYL 1067
               +   ++  TA   +   EQ L AGMD  I KP    NLR +L +++
Sbjct: 503  ATSSGVPIIAMTAHAMKGDREQFLAAGMDDYIGKPINSDNLRSLLLKHI 551