Pairwise Alignments

Query, 1176 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1162 a.a., PAS/PAC sensor hybrid histidine kinase (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  204 bits (518), Expect = 4e-56
 Identities = 157/516 (30%), Positives = 242/516 (46%), Gaps = 76/516 (14%)

Query: 618  RKYYLTLFNDITELKETEQALRQSNEQALQAVEARNHFLAVVSHELRTPIAAMLGLMEIL 677
            R+  + +  D+T  KE E AL +    A  A  A++ FLA +SHE+RTP+   LG++++L
Sbjct: 645  RRAVIRMAVDVTGRKEAEAALLREKGAAEAANLAKSEFLANMSHEIRTPLNGSLGMLQLL 704

Query: 678  ASRLKSSESQLLLTNAISSAERLKLHVNDILDFSKIEAQQLQLDIGLYNLADELGPLLRG 737
             +     E Q  LT+AI+SA RL   ++D+LD S++EA +L L    + L    G +   
Sbjct: 705  QTTTLDEEQQDYLTSAITSARRLTQLLSDVLDLSRVEAGRLALRAAPFALEGVAGSIRDI 764

Query: 738  FEASAQLKEIEFDVIWSPNSLLLANFDALRFNQIVTNLLSNAIKFTDQGRVVFKID---- 793
            F   A+ KE+E D+   P        D  R  QI  NL+ NAIKFTD G V  ++     
Sbjct: 765  FLLPAREKELELDIRLDPRLPARLVGDEARLRQIAFNLVGNAIKFTDTGSVTVELTPLGL 824

Query: 794  --------------------------VAPEMLTIVVEDTGCGMTQTQIESLFVPFAQADS 827
                                       A   L + V DTG G+ ++ +E +F PF+Q D 
Sbjct: 825  PPAARPAGNAAGDATSGPAGNTPAHRPAQLRLLLEVRDTGIGIPESHLERIFEPFSQLDG 884

Query: 828  TITRRFGGTGLGMSIVANLIELMNGKIEVKSEFEQGTQIQVNLPL-VTQTCD-----EFR 881
            +  RR GG GLG+SIV  L+ LM G++ ++S    GT I ++LP       D       R
Sbjct: 885  SHVRRHGGAGLGLSIVRRLVALMGGELSLESTPGTGTNIFISLPFGALWDADGADRAPAR 944

Query: 882  GQVVAMSYRSPYMLW--------------------AKALGMRVEENE-----EWVEQSGH 916
            G  V +    P                        A  +GM     +       + QSG 
Sbjct: 945  GPFVPLDAPGPTGTKGTNGTNGSGTAAGHDDAGGNAGGMGMPARHADVSALPRGMAQSGK 1004

Query: 917  NIYPDLLLNRLREVSNLTQAQTEPAHSRLLQG----HVLVADDDAINRLLIKKQLSELGL 972
                    + +R  +   QA+  PA++ L +     HVL+ +DDA+N+L +++ L + G+
Sbjct: 1005 G------HSGMRGATPAQQAEPAPANAALPEHQAGLHVLLVEDDAVNQLAVRRMLEKSGM 1058

Query: 973  SATLVSDGLQAFEKLSQHPEQYDLLITDCHMPHLDGFALTRKVKQEISLFKGA---VVGC 1029
            + TLV+DG QA + L  H   +D ++ D  MP +DG   TR ++ + +    A   VV  
Sbjct: 1059 TVTLVTDGQQALDAL--HHAAFDCVVMDVQMPVMDGLTATRAIRTDPAFASRAAIPVVAM 1116

Query: 1030 TAEDSRLAAEQALQAGMDKVIYKPYTLANLRKVLSR 1065
            TA       E  ++AGMD  + KP  ++ LR+ + R
Sbjct: 1117 TAHAMVGDRESFMEAGMDDYVSKPVEMSGLRQAILR 1152