Pairwise Alignments

Query, 1176 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056

Subject, 935 a.a., hybrid sensory histidine kinase BarA (RefSeq) from Shewanella oneidensis MR-1

 Score =  154 bits (390), Expect = 2e-41
 Identities = 97/257 (37%), Positives = 151/257 (58%), Gaps = 14/257 (5%)

Query: 629 TELKETEQALRQSN-------EQALQAVEARNHFLAVVSHELRTPIAAMLGLM-EILASR 680
           ++L+ET + +   N       ++AL+A   ++ FLA +SHELRTP+  ++G   +++ + 
Sbjct: 271 SDLRETLEQIEIQNVELDLAKKRALEASRIKSEFLANMSHELRTPLNGVIGFARQLVKTP 330

Query: 681 LKSSESQLLLTNAISSAERLKLHVNDILDFSKIEAQQLQLDIGLYNLADELGPLLRGFEA 740
           L SS+   + T   S+   L + +NDILDFSK+EA ++ L+   + L + LG  +     
Sbjct: 331 LHSSQVDYINTIERSATNLLAI-INDILDFSKLEAGKMVLESMPFGLRETLGETITLISG 389

Query: 741 SAQLKEIEFDVIWSPNSLLLANFDALRFNQIVTNLLSNAIKFTDQGRVVFKIDVAPE--- 797
           SAQ K +E  V  +PN     N D++R  QI+ NL+ NAIKFTD G V+ K+++  +   
Sbjct: 390 SAQAKGLELVVDIAPNVPDNVNGDSMRVCQIINNLVGNAIKFTDSGSVLVKLELQAQTDE 449

Query: 798 --MLTIVVEDTGCGMTQTQIESLFVPFAQADSTITRRFGGTGLGMSIVANLIELMNGKIE 855
             +L   V DTG G+ ++Q + LF  F QADS+I+RRFGGTGLG+ I   L+  M G+I 
Sbjct: 450 QVVLRCDVIDTGIGIDESQQDFLFQAFGQADSSISRRFGGTGLGLVITKRLVNQMGGQIG 509

Query: 856 VKSEFEQGTQIQVNLPL 872
             S  ++G+     LPL
Sbjct: 510 FTSSVDKGSNFWFTLPL 526



 Score = 61.2 bits (147), Expect = 4e-13
 Identities = 61/249 (24%), Positives = 114/249 (45%), Gaps = 29/249 (11%)

Query: 950  VLVADDDAINRLLIKKQLSELGLSATLVSDGLQAFEKLSQHPEQYDLLITDCHMPHLDGF 1009
            VL  DD+  N  LI   L+EL  +   V+ G +A ++       +DL+  D  MP  DG 
Sbjct: 684  VLAVDDNFANLKLIDTLLNELVTTVIAVNSGEEAVKQAKTRT--FDLIFMDIQMPGTDGI 741

Query: 1010 ALTRKVKQEISLFKGAVVGCTAEDSRLAAEQALQAGMDKVIYKPYTLANLRKVLSRYLTT 1069
            + T++++Q        ++  TA       E  L +GMD  + KP   A L+  ++R    
Sbjct: 742  SATKQIRQGSMNRNTPIIAVTAHAIAEERELILGSGMDGYLPKPIDEAALKAEINR---- 797

Query: 1070 QWVALPEQSWLDAY---------QEEEREEMAM----VVAESLAQDI----ALLNQPD-C 1111
             W+  P+ +  D +         Q   +  +A+    ++ +SL Q +    A L+Q D  
Sbjct: 798  -WITRPKFTHFDLHTLNWDLCLTQANHKSGLALDMLRMLLDSLPQTVSAIEAALSQNDQV 856

Query: 1112 DVKALAHRIKGAA---GSLQLQRLA-DLAKTVEKQNDPQQLVADKQQLINAMHEVVEQAQ 1167
             + +  H++ GA+   G    QRL  ++   ++++   + L  +  +L++ + +V   A+
Sbjct: 857  TMLSTIHKLHGASCYCGVPTTQRLCQEIESALKREARVEDLEPEILELLDELTKVESAAK 916

Query: 1168 QWLHQYQSE 1176
            Q L Q  +E
Sbjct: 917  QVLSQLSAE 925