Pairwise Alignments

Query, 1176 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056

Subject, 696 a.a., GAF/PAS-family sensor histidine kinase from Caulobacter crescentus NA1000

 Score =  167 bits (422), Expect = 4e-45
 Identities = 136/457 (29%), Positives = 217/457 (47%), Gaps = 67/457 (14%)

Query: 622  LTLFNDITELKETEQALRQSNEQALQAVEARNHFLAVVSHELRTPIAAMLGLMEILASRL 681
            +T F D+TEL+E E  LR + E A +A   ++ F+A VSHE+RTP+  ++ L   L    
Sbjct: 294  VTSFIDVTELRERETELRDALELAERASRVKSQFVANVSHEIRTPLNGVIALASALRQSA 353

Query: 682  KSSESQLLLTNAISSAERLKLHVNDILDFSKIEAQQLQLDIGLYNLADELGPLLRGFEAS 741
             +   + ++   + S   L+  ++ +LD +KIEA++++L+I  + L D +      F+  
Sbjct: 354  LTDRQREMVEIIVESGTTLESILSALLDLAKIEAERMELEIVSFGLEDLVRSSTDLFKIK 413

Query: 742  AQLKEIEFDVIWSPNSLLLANFDALRFNQIVTNLLSNAIKFTDQGRVVFKI-----DVAP 796
            A  K + FDV            DA +  QI+ NLL+NAIKFTD G +   +     D A 
Sbjct: 414  ADNKGLGFDVSVIAPPGARYRGDAQKIRQILWNLLANAIKFTDAGEIAVSVTVEGADPAA 473

Query: 797  EMLTIVVEDTGCGMTQTQIESLFVPFAQADSTITRRFGGTGLGMSIVANLIELMNGKIEV 856
            + L I V DTG G++      LF PF Q D++ TRRFGGTGLG++I   L  +M G IE 
Sbjct: 474  QTLLIEVRDTGVGLSPEMEHVLFEPFIQGDASATRRFGGTGLGLTICRALARMMGGDIEA 533

Query: 857  KSEFEQGTQIQVNLPLVTQTCDEFRGQVVAMSYRSPYMLWAKALGMRVEENEEWVEQSGH 916
             +  E+G+  +V++P+ T   +       +++  S   L      + VE+N         
Sbjct: 534  LARAERGSVFRVHVPVSTAEPE------ASVAVESEADLATAMTILLVEDN--------- 578

Query: 917  NIYPDLLLNRLREVSNLTQAQTEPAHSRLLQGHVLVADDDAINRLLIKKQLSELGLSATL 976
                                   P + R+++             LL++   +EL     +
Sbjct: 579  -----------------------PNNRRVVE-------------LLLEPTGAEL----VM 598

Query: 977  VSDGLQAFEKLSQHPEQYDLLITDCHMPHLDGFALTRKVK-QEISLFKG----AVVGCTA 1031
              +G +A   L+   +++DL++ D  MP +DG   TR+V+  E    +G     +V  TA
Sbjct: 599  AENGAEALTILA--TQRFDLILMDMQMPVMDGLTATREVRCLEAREGEGRTPTPIVMMTA 656

Query: 1032 EDSRLAAEQALQAGMDKVIYKPYTLANLRKVLSRYLT 1068
              SR   + A  AG D  I KP T A L   ++  LT
Sbjct: 657  NASREHRDAAFAAGADGFITKPVTPATLYAGINTALT 693