Pairwise Alignments

Query, 1176 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056

Subject, 690 a.a., GAF/PAS-family histidine kinase/receiver protein from Caulobacter crescentus NA1000

 Score =  156 bits (395), Expect = 5e-42
 Identities = 123/382 (32%), Positives = 183/382 (47%), Gaps = 16/382 (4%)

Query: 505 RLRGKLRSSEQVAKLSTEQL----RWLTELLDAIPSMIFISDAKGEVVLTNAAYRKIYHT 560
           R   +L +SE  A+L  EQ     R L+   D    ++ IS+ +G  V  N A+      
Sbjct: 168 RAEEELAASEARARLLAEQALETSRNLSNFFDVSADLLSISNMQGRFVKVNRAWETALGY 227

Query: 561 CCEKGCVQPQPECSFLALPDQHEAEFSII-IQAPKSNCSIGEHYFHVTRRAISHPINQRK 619
             E   ++  P    L   DQ      I  I+           Y              R+
Sbjct: 228 PIE--ALEGVPFLPLLHPEDQQSTRVQINRIEVDDEVNGFVNRYRRADGSYCQLEWRARR 285

Query: 620 YYLTLFN---DITELKETEQALRQSNEQALQAVEARNHFLAVVSHELRTPIAAMLGLMEI 676
               +F    D+TE    +  + ++ + A  A  A+N FLA +SHE+RTP+  ++ L   
Sbjct: 286 CDDLVFGVARDVTERLRIQAEMAEARDAAEAANRAKNDFLANMSHEIRTPLNGVIALAAA 345

Query: 677 LASRLKSSESQLLLTNAISSAERLKLHVNDILDFSKIEAQQLQLDIGLYNLADELGPLLR 736
           L     +S+   ++     S E L+  V+DILD SKIEA Q+ L    ++L   +  LL 
Sbjct: 346 LDETPLTSKQAEMVAMIRRSGETLERLVSDILDVSKIEAGQMTLQPQAFDLGALVDGLLD 405

Query: 737 GFEASAQLKEIEFDVIWSPNSLLLANFDALRFNQIVTNLLSNAIKFTDQGRVVFKIDVAP 796
                A+ K +   +  SP +      D++R  Q+++NL SNA+KFTDQG V+ ++DV  
Sbjct: 406 VTRLRAKEKGVAVRLERSPTAAGGFLGDSVRIGQVLSNLFSNAVKFTDQGEVIVRVDVEE 465

Query: 797 E------MLTIVVEDTGCGMTQTQIESLFVPFAQADSTITRRFGGTGLGMSIVANLIELM 850
                   L + VEDTG G    + E +F  F QADSTITRRFGG+GLG+SI   L+E+M
Sbjct: 466 AGNGQAARLFVEVEDTGVGFDAEKAEMIFQRFNQADSTITRRFGGSGLGLSISKTLVEMM 525

Query: 851 NGKIEVKSEFEQGTQIQVNLPL 872
            G+I  +S    G+  +V LPL
Sbjct: 526 GGEITAQSSPGAGSLFRVTLPL 547