Pairwise Alignments

Query, 1176 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056

Subject, 605 a.a., PAS-family sensor histidine kinase from Caulobacter crescentus NA1000

 Score =  164 bits (416), Expect = 2e-44
 Identities = 138/453 (30%), Positives = 212/453 (46%), Gaps = 66/453 (14%)

Query: 622  LTLFNDITELKETEQALRQSNEQALQAVEARNHFLAVVSHELRTPIAAMLGLMEILA-SR 680
            L    DITE K  E  + ++ + A  A  A++ FLA ++HELRTP+ A++G  E+L  SR
Sbjct: 204  LVTSRDITERKRLELDIAKALQMAEAASAAKSDFLANMTHELRTPLTAIIGFAEVLRRSR 263

Query: 681  LKSSESQLLLTNAISSAERLKLHVNDILDFSKIEAQQLQLDIGLYNLADELGPLLRGFEA 740
              +  +   + + + ++  L   VND+LDFS++EA  L+LD   ++ A            
Sbjct: 264  NLNKTAARQVGHILDASNTLLSVVNDVLDFSRLEAGGLELDPAPFDPAAMASSCAGLVAE 323

Query: 741  SAQLKEIEFDVIWSPNSLLLANFDALRFNQIVTNLLSNAIKFTDQGRVVFK----IDVAP 796
             A+ K +  +V  +P  L   N D  R +Q++ N LSNA+KFT  G +       ID   
Sbjct: 324  RAEAKGLAVEVR-APRGLKPMNLDGPRLSQVLLNFLSNAVKFTSHGAITVALRQTIDGDQ 382

Query: 797  EMLTIVVEDTGCGMTQTQIESLFVPFAQADSTITRRFGGTGLGMSIVANLIELMNGKIEV 856
             +L   V DTG G+     E++F  F+QAD+ ++RRFGGTGLG++I   +IE M+G+I V
Sbjct: 383  AVLRGEVTDTGIGIAPEHRENIFDRFSQADAAVSRRFGGTGLGLAISRRIIERMDGRIGV 442

Query: 857  KSEFEQGTQIQVNLPLVTQTCDEFRGQVVAMSYRSPYMLWAKALGMRVEENEEWVEQSGH 916
             S   QG+                                             W E  G 
Sbjct: 443  DSVEGQGSTF-------------------------------------------WFEVRGP 459

Query: 917  NIYPDLLLNRLREVSNLTQAQTEPAHSRLLQGHVLVADDDAINRLLIKKQLSELGLSATL 976
                DL      E S L       A  RLL     + +D+A+NR LI   L   G++   
Sbjct: 460  --LADLPTQEAVETSPL----DADAGVRLL-----LVEDNAVNRELICAILEPFGVAIET 508

Query: 977  VSDGLQAFEKLSQHPEQYDLLITDCHMPHLDGFALTRKVKQEISLFKGAVVGCTAEDSRL 1036
             +DG+   E + Q    YDL++ D  MP +DG   TR+++  +   +GA     A  + +
Sbjct: 509  ANDGVAGVEAMRQ--GHYDLVLMDVQMPMMDGLTATREIR-AMEGARGASTPIIAMTANV 565

Query: 1037 AAEQ---ALQAGMDKVIYKPYTLANLRKVLSRY 1066
              EQ    + AGMD  + KP + A L + ++R+
Sbjct: 566  LPEQVANCMAAGMDDHLGKPISPAKLLEAVARW 598