Pairwise Alignments

Query, 1176 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1626 a.a., putative PAS/PAC sensor protein (RefSeq) from Shewanella sp. ANA-3

 Score =  170 bits (431), Expect = 8e-46
 Identities = 132/425 (31%), Positives = 213/425 (50%), Gaps = 75/425 (17%)

Query: 627  DITELKETEQALRQSNEQALQAVEARNHFLAVVSHELRTPIAAMLGLMEILASRLKSSES 686
            DIT  ++ E+ LR + ++A  A  A++ FLA +SHE+RTP+ A+LG+++++     S + 
Sbjct: 875  DITAQRQLEKTLRNAKQEADTANAAKSAFLANMSHEIRTPMNAVLGMLQLMQYTALSVQQ 934

Query: 687  QLLLTNAISSAERLKLHVNDILDFSKIEAQQLQLDI---GLYNLADELGPLLRGFEASAQ 743
            Q  +T A ++A+ L   +NDILDFSKI+A +L+LD+    +  L  +L  +L     ++ 
Sbjct: 935  QGYVTKAQTAAKSLLGLLNDILDFSKIDAGKLKLDLHPCSIELLMRDLAVVLSANHGNSD 994

Query: 744  LKEIEFDVIWSPNSLLLANFDALRFNQIVTNLLSNAIKFTDQGRVVFKIDV---APEMLT 800
            + E+ FD+  +  + LLA  D LR  QI+ NL  NA+KFT  G+V+  ++      E +T
Sbjct: 995  V-EVMFDLDSALPAWLLA--DQLRLQQILINLAGNALKFTPHGQVIVGLECLRHEAESVT 1051

Query: 801  I--VVEDTGCGMTQTQIESLFVPFAQADSTITRRFGGTGLGMSIVANLIELMNGKIEVKS 858
            +   + D+G G+++ QIE +F  F QA+S+ +RRFGGTGLG++I   L+ELM G+++V S
Sbjct: 1052 VQFSIVDSGIGISEEQIERIFTGFEQAESSTSRRFGGTGLGLAISKRLVELMGGQLQVTS 1111

Query: 859  EFEQGTQIQVNLPLVTQTCDEFRGQVVAMSYRSPYMLWAKALGMRVEENEEWVEQSGHNI 918
            +   G++   +L                               M VE N    + SG+ I
Sbjct: 1112 KVGVGSRFWFDLTFPV---------------------------MEVEANPR-ADLSGYRI 1143

Query: 919  YPDLLLNRLREVSNLTQAQTEPAHSRLLQGHVLVADDDAINRLLIKKQLSELGLSATLVS 978
                                            LV DD+ I   ++ K LS+ G      S
Sbjct: 1144 --------------------------------LVVDDNQITTEILSKILSDYGCVVETAS 1171

Query: 979  DGLQAFEKLSQ---HPEQYDLLITDCHMPHLDGFALTRKVKQE-ISLFKGAVVGCTAEDS 1034
             G QA EK+ Q   + +Q+D+++ D  MP +DG      +K      +   VV  TA   
Sbjct: 1172 GGYQAIEKVKQATANAQQFDVVLMDWRMPDIDGLQTAEMLKNAGTGSYTPLVVMLTAYGH 1231

Query: 1035 RLAAE 1039
             + AE
Sbjct: 1232 EVIAE 1236



 Score = 77.4 bits (189), Expect = 9e-18
 Identities = 62/236 (26%), Positives = 105/236 (44%), Gaps = 29/236 (12%)

Query: 936  AQTEPAHSRLLQG-HVLVADDDAINRLLIKKQLSELGLSATLVSDGLQAFEKLSQHPEQY 994
            A  +P   RLL G  +LV +D+ +NR +I + L+  G +  L   G++   ++    + +
Sbjct: 1273 ANPKPRSQRLLAGLTLLVVEDNQLNREVIDELLTYEGATVVLAEGGIEGVTQVLDSGDMF 1332

Query: 995  DLLITDCHMPHLDGFALTRKVKQEISLFKGAVVGCTAEDSRLAAEQALQAGMDKVIYKPY 1054
            D +I D  MP +DG   TR+++ +    +  ++  TA  S+   ++ L+AGM+  + KP 
Sbjct: 1333 DAVIMDMQMPDIDGLEATRRIRADGRFDQLPILAMTANASQADKQECLEAGMNAHVSKPI 1392

Query: 1055 TLANLRKVLSRYL--TTQWVALPEQSWLDAYQEEER---------------------EEM 1091
             +  L   + R +       A PE   LDA    E                      E+M
Sbjct: 1393 DMQQLLPNILRLVGRDAAQFAEPESMHLDAQHNLEGETLLDDIRLILRRFGGNQVFFEKM 1452

Query: 1092 AMVVAESLAQDIALLNQPD-----CDVKALAHRIKGAAGSLQLQRLADLAKTVEKQ 1142
            A   A  + + ++L  Q           A++H IKG A +   +RLA  A  +EKQ
Sbjct: 1453 ASSFAPEMIKQLSLFKQSTKTFDYATTAAISHAIKGIASNFGARRLAVHAAFLEKQ 1508