Pairwise Alignments

Query, 1176 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056

Subject, 935 a.a., hybrid sensory histidine kinase BarA (RefSeq) from Shewanella sp. ANA-3

 Score =  154 bits (390), Expect = 2e-41
 Identities = 98/257 (38%), Positives = 150/257 (58%), Gaps = 14/257 (5%)

Query: 629 TELKETEQALRQSN-------EQALQAVEARNHFLAVVSHELRTPIAAMLGLM-EILASR 680
           ++L+ET + +   N       ++AL+A   ++ FLA +SHELRTP+  ++G   +++ + 
Sbjct: 271 SDLRETLEQIEIQNVELDLAKKRALEASRIKSEFLANMSHELRTPLNGVIGFARQLVKTP 330

Query: 681 LKSSESQLLLTNAISSAERLKLHVNDILDFSKIEAQQLQLDIGLYNLADELGPLLRGFEA 740
           L SS+   + T   S+   L + +NDILDFSK+EA ++ L+   + L + LG  +     
Sbjct: 331 LHSSQVDYINTIERSATNLLAI-INDILDFSKLEAGKMVLENMPFGLRETLGETITLISG 389

Query: 741 SAQLKEIEFDVIWSPNSLLLANFDALRFNQIVTNLLSNAIKFTDQGRVVFKIDVAPE--- 797
           SAQ K +E  V  +PN     N DA+R  QI+ NL+ NAIKFTD G V+ K+++  +   
Sbjct: 390 SAQAKGLELVVDIAPNVPDNVNGDAMRVCQIINNLVGNAIKFTDSGSVLVKLELQNQTDD 449

Query: 798 --MLTIVVEDTGCGMTQTQIESLFVPFAQADSTITRRFGGTGLGMSIVANLIELMNGKIE 855
             +L   V DTG G+ + Q + LF  F QADS+I+RRFGGTGLG+ I   L+  M G+I 
Sbjct: 450 QVVLRCDVIDTGIGIDENQQDFLFQAFGQADSSISRRFGGTGLGLVITKRLVNQMGGQIG 509

Query: 856 VKSEFEQGTQIQVNLPL 872
             S  ++G+     LPL
Sbjct: 510 FTSSVDKGSNFWFTLPL 526



 Score = 62.4 bits (150), Expect = 2e-13
 Identities = 64/263 (24%), Positives = 116/263 (44%), Gaps = 31/263 (11%)

Query: 936  AQTEPAHSRLLQGHVLVADDDAINRLLIKKQLSELGLSATLVSDGLQAFEKLSQHPEQYD 995
            A T PA  + L   VL  DD+  N  LI   L+EL  +   V+ G +A ++       +D
Sbjct: 672  AITVPAARQSLT--VLAVDDNFANLKLIDTLLNELVTTVIAVNSGEEAVKQAKSRT--FD 727

Query: 996  LLITDCHMPHLDGFALTRKVKQEISLFKGAVVGCTAEDSRLAAEQALQAGMDKVIYKPYT 1055
            L+  D  MP  DG + T++++Q        ++  TA       E  L +GMD  + KP  
Sbjct: 728  LIFMDIQMPGTDGISATKQIRQGSMNRNTPIIAVTAHAIAEERELILGSGMDGYLPKPID 787

Query: 1056 LANLRKVLSRYLTTQWVALPEQSWLDAY---------QEEEREEMAM----VVAESLAQD 1102
             A L+  ++R     W+  P+ +  D +         Q   + ++A+    ++ +SL Q 
Sbjct: 788  EAALKAEINR-----WITRPKFTHFDLHTLNWDLCLTQANHKSDLALDMLRMLLDSLPQT 842

Query: 1103 I-----ALLNQPDCDVKALAHRIKGAA---GSLQLQRLA-DLAKTVEKQNDPQQLVADKQ 1153
            +     AL       +    H++ GA+   G    QRL  ++   +++    + L  +  
Sbjct: 843  VSAIETALSQNDQATMLTTIHKLHGASCYCGVPTTQRLCQEIESALKRDARVEDLEPEIL 902

Query: 1154 QLINAMHEVVEQAQQWLHQYQSE 1176
            +L++ + +V   A+Q L Q  +E
Sbjct: 903  ELLDELTKVESAAKQVLSQLSAE 925