Pairwise Alignments

Query, 584 a.a., diguanylate phosphodiesterase from Vibrio cholerae E7946 ATCC 55056

Subject, 399 a.a., response regulator receiver modulated diguanylate phosphodiesterase (RefSeq) from Shewanella loihica PV-4

 Score =  169 bits (429), Expect = 1e-46
 Identities = 114/385 (29%), Positives = 189/385 (49%), Gaps = 10/385 (2%)

Query: 1   MKIMIVEDDRIQATSLKLKLRQLGLDDVILAENGFAALELCNKVGID--LMFCDIRMPQM 58
           + ++IV+D       L      L +D V    +  +A+   +K   D  ++  D+ MP++
Sbjct: 3   INVLIVDDSLSACRVLSRHFLLLDVDKVEFCRDARSAIRTLSKYSDDYQIVVVDLHMPEV 62

Query: 59  DGISLLSQLSLQAPKLGVVILSAVEDTILELTHNMCSLAGFAYVDRLPKPYEVEDLQRVV 118
           DGI  L +LS    K G++I S +E  I+E    +   +    +  L KP   E L+  V
Sbjct: 63  DGIEFLMRLSKMEFKGGIIIASGMESRIVEAASQLVEASKLRLLGALMKPVTTEQLRVCV 122

Query: 119 EGFQKQTEPETSHKPAITLTCDEIEQAFLHDHIFNYYQPQFDFRSGAMVGVEALVRYEHP 178
           E ++         +    ++ DEI +A   + I  YYQ Q D  SG + G E L R +  
Sbjct: 123 ERYRLMAFQGNGVRHKGLMSIDEIRRAINSNKIIPYYQAQVDIASGKIKGFEVLCRLQQG 182

Query: 179 TH-GMLSPAVFLPLIEQCGLHEKLFLTVLEKSVSALASIGA-----DLQLSVNISQRNLQ 232
           T   +++P  F+ + E       L   +L  ++   A I          LS+N++ + L 
Sbjct: 183 TRLQLITPDKFIDVAECNNALNSLTTKLLNNAIPEWALISQFESCKQCHLSINLTPKQLN 242

Query: 233 HSICDP-ILAICERYGFPASKLTLEMTEHEVYNGTPTSLANLARLRMYGVGLSIDDFGTG 291
            S     ++  CE+     S+LT+E+TE++V +      + +++LRM  +G++IDDFGTG
Sbjct: 243 QSGWHTRLMQYCEQNLLSPSRLTVEITENQVLD-KQRQHSTISQLRMNRIGVAIDDFGTG 301

Query: 292 YASLGQLAQLPFTELKIDRSFVHDLATNYKHQQLTNMCLLLAQSLGLHCVVEGVENEETW 351
           Y +L QL  LP +ELK+DRS VH +  +   Q +      ++  LG+H V EGVE+    
Sbjct: 302 YTNLSQLCTLPISELKLDRSLVHGIHKDPVSQTILKSMQAISGKLGIHLVAEGVEDIHDL 361

Query: 352 QYLRQLGVDTCQGYYAAKPMPIAQL 376
            YL Q+   + QGY   +P P ++L
Sbjct: 362 NYLEQIEDISLQGYLICRPKPYSEL 386