Pairwise Alignments

Query, 818 a.a., collagenase from Vibrio cholerae E7946 ATCC 55056

Subject, 603 a.a., collagenase (RefSeq) from Shewanella loihica PV-4

 Score =  171 bits (432), Expect = 1e-46
 Identities = 95/252 (37%), Positives = 140/252 (55%), Gaps = 17/252 (6%)

Query: 317 RILPNRFECQGPAIIRSQDLSDAQAAQACDVLDKKEQDFHQVANTGLAPVADDYNTRVEV 376
           ++LP   +C     I +QDL+  + + +C  L  +E +FH++  T   P A+D N  ++V
Sbjct: 316 QVLPIHHQCSDSLYILAQDLTPNELSSSCTKLTSQEANFHRLLETQHQPTANDNNDALQV 375

Query: 377 VVFANNSSYVNYSSFLFGNTTDNGGQYLEGNPADQNNQARFVAYR-YANDADLSILNLEH 435
           V F N S Y  Y   LF   TDNGG Y+EG P++  NQA F AYR +    + +I NL H
Sbjct: 376 VAFKNWSQYNAYGQLLFDIGTDNGGMYIEGTPSNPENQASFFAYRQFWIAPEFAIWNLNH 435

Query: 436 EYTHYLDARFNQYGSFSDNLAHGH----IVWWLEGFAEYMHYKQGYQAAVKLISQGKL-- 489
           EY HYLD RF +YG F      GH    +VWW EG AEY+       + +K+I + KL  
Sbjct: 436 EYVHYLDGRFVKYGGF------GHFPRKLVWWSEGLAEYVSKGNDNPSTLKVI-KAKLGE 488

Query: 490 --SLSDVFATTYSNDTNRIYRWGYLAVRFMLEKHPQDVESLLALSRTGQFDQWAQSVKLL 547
              L  +FAT Y +  +R Y+W Y+A+RF+ E HP+++  L    +T  F+ + + +  L
Sbjct: 489 APDLKTIFATEYKDGLDRTYKWSYMAIRFLAEHHPEELVRLSHYLKTDYFEGYEKLLDQL 548

Query: 548 GERYNTEFSAWL 559
            E+  + FS WL
Sbjct: 549 SEQ-QSAFSNWL 559