Pairwise Alignments

Query, 818 a.a., collagenase from Vibrio cholerae E7946 ATCC 55056

Subject, 293 a.a., collagenase (RefSeq) from Shewanella loihica PV-4

 Score =  190 bits (483), Expect = 8e-53
 Identities = 103/262 (39%), Positives = 144/262 (54%), Gaps = 21/262 (8%)

Query: 318 ILPNRFECQGPAIIRSQDLSDAQAAQACDVLDKKEQDFHQVANTGLAPVADDYNTRVEVV 377
           +L    +C     IRSQ L+  Q  QAC ++ K+E  FHQ+  T   PVA+D N R+   
Sbjct: 30  VLSQNHDCSPTITIRSQALTQEQITQACALMQKQEAKFHQLFGTQGKPVANDNNQRMRAN 89

Query: 378 VFANNSSYVNYSSFLFGNTTDNGGQYLEGNPADQNNQARFVAYRYANDADLSILNLEHEY 437
           V+ +   Y  Y +  F   +DNGG +LEG P    NQA FVAY    + +  I NL HEY
Sbjct: 90  VYHSRDDYTRYVTAHFDVPSDNGGMFLEGLPHLAGNQAEFVAY----ERNGQIWNLAHEY 145

Query: 438 THYLDARFNQYGSFSDNL--AHG-------------HIVWWLEGFAEYMHYKQGYQAAVK 482
            HYLD  FN YG F  +L  +H              H+VWW EG  EY+       AA+ 
Sbjct: 146 VHYLDGHFNLYGDFCASLHDSHSAPEYCPEPAPLLPHLVWWSEGLGEYISQGDDNPAAIA 205

Query: 483 LISQGKLSLSDVFATTYSND--TNRIYRWGYLAVRFMLEKHPQDVESLLALSRTGQFDQW 540
           +I++    LS++F T+Y ++  T+R+YRWGYLAVRFM+E H   ++++L  +R G + ++
Sbjct: 206 IIAKQHFELSELFNTSYEHNGGTDRVYRWGYLAVRFMMEHHKDKIDTMLGFTRKGDYPRY 265

Query: 541 AQSVKLLGERYNTEFSAWLDTL 562
              VK  G   + EF AWL TL
Sbjct: 266 QALVKQWGTSMDAEFQAWLKTL 287