Pairwise Alignments

Query, 818 a.a., collagenase from Vibrio cholerae E7946 ATCC 55056

Subject, 968 a.a., collagenase (RefSeq) from Shewanella loihica PV-4

 Score =  264 bits (675), Expect = 2e-74
 Identities = 210/804 (26%), Positives = 359/804 (44%), Gaps = 77/804 (9%)

Query: 52  ACYNSWFYAPTATLDNLYSEASLAHLQTVLDAEIARYTGEAQQARRLENYGEFIRAAYYV 111
           +C +  +    AT   +Y   ++  +  +  A  A Y  ++     L N   F+R A+Y+
Sbjct: 169 SCISELYSHNDATAVKVYQADNVVAVANLAKATAASY--DSSTGGELFNLFYFLRGAFYI 226

Query: 112 RYNAGREPYSQA-LSQRFAQSIDRFLRHPHAFDQGREQVGAMKSLSLMVDNVKQLPLTMD 170
            Y      Y  +  S    + +  + ++P        Q   ++   +  D+      ++ 
Sbjct: 227 EYYNDDLSYGDSRASDAMRELLLEYAKNPAFNSLSDMQGNTLQEYFIAWDSSYNYYDSVA 286

Query: 171 AMILALHRFNRETAQD----TQWVDGLNNLFRAM--SGHVGNSEFYRYLAANTQHIDTLY 224
            +   L++F+ +        +     L  L+R      +   S  Y  L A    + T  
Sbjct: 287 VITDYLNQFSEQHLASWYHRSALTKALTTLYRGNWDEKYTKASMEYDALRAALLKVATS- 345

Query: 225 RFALDNEWALETDAEFLVYNALRETGRLLISPDAITKQKARHVMRQVIARYPLGSKHDKL 284
            + +++E+A E+   F  +    E       PD++ K      ++Q +A++   ++  K 
Sbjct: 346 DYIINSEYAFESTDAFHEFGRFYEYQAYWKLPDSL-KTALNGGVQQYMAKF---NRLSKQ 401

Query: 285 WLAAVEMLHYYAPEVLQQLGIDLDAAKRDLAARILPNRFECQGPAIIRSQDLSDAQAAQA 344
           W+ A   L YY P      GI     + ++ A +L   + C     IR+Q L+D +   +
Sbjct: 402 WVDAAGYLDYYNPGQCDSFGIC--GWEDEVEASVLAIHYSCSDTIKIRAQQLTDQELQAS 459

Query: 345 CDVLDKKEQDFHQVANTGLAPVADDYNTRVEVVVFANNSSYVNYSSFLFGNTTDNGGQYL 404
           C+++ ++E  FHQ+  TG  PVADDYN  ++V +F +   Y  Y+  +FG  TDNGG YL
Sbjct: 460 CELMGEEEGLFHQILATGGEPVADDYNEDLQVNIFDSYDDYDVYAGIIFGINTDNGGMYL 519

Query: 405 EGNPADQNNQARFVAYRYANDADLSILNLEHEYTHYLDARFNQYGSFS-DNLAHGHIVWW 463
           EG P+D +NQARF+A+      D+ + NL HEY HYLD RFN YG+F+  ++  G  VWW
Sbjct: 520 EGTPSDPDNQARFIAHEATWTDDILVWNLRHEYVHYLDGRFNLYGAFNYFDVDTGKSVWW 579

Query: 464 LEGFAEYMHYKQGYQAAVKLISQGKLSLSDVFATTYSNDTNRIYRWGYLAVRFMLEKHPQ 523
            EG AEY+ ++  Y  A+ +    + SLS++ + TY + T+R+YRWGYLAVRF+ E+H  
Sbjct: 580 AEGLAEYISHQNRYDEAIDIGRSQEFSLSEILSNTYDSGTDRVYRWGYLAVRFLFEQHRS 639

Query: 524 DVESLLALSRTGQFDQWAQSV-KLLGERYNTEFSAWL------DTLQRDNPDNPDNPDN- 575
           DV++LL  +R G    W   +   +G  Y+ E+++WL      DTL       P + D  
Sbjct: 640 DVDALLVHARAGDTSAWLSYIDNTIGTNYDAEWNSWLLTVTSNDTLLDGGIVTPVDSDGD 699

Query: 576 ---------PDNP------------DNPDNPEQPNPEPNAVTQLAANSSLTL-------- 606
                    P++P            DN D         N      ++ ++T         
Sbjct: 700 GVIDSEDAFPNDPTEWADENGNGIGDNADAANGGGQTGNCGAATISDGNITQEQAECVAG 759

Query: 607 TGKAYSEHLFYVDVPEYSREFHVQIS-GEGDADLYMSYQQVAHYYDYQVTEFTYGSNEQI 665
           TG  Y    +Y  V + + + ++  + GEGD D+Y + Q  A   DY+V     G+ E I
Sbjct: 760 TGVNY----YYTYVEQDNTQLYISTTGGEGDLDIYFNQQTWASPSDYEVKSQNSGNEELI 815

Query: 666 TFKPEQNGYIKPGRYYLSVTGRADYSAVIL--NTHLVTEQPNEQPTIKD---DLAPVL-- 718
           +    +      G  YLS      +  V L  +    T   N  P + D     +P    
Sbjct: 816 SVVANR------GWVYLSTVAVTPFEGVSLKISQSADTTPDNGSPQVADACLSQSPYSYG 869

Query: 719 -LEAGNSQSLTVHRQRYVAIYVPKGVSEVQVWLTASEQNRGNVDLFAAKAYWPTREQFEH 777
            +E G +  +      Y   YVP   + +++    +    G+++L+A    W +   ++ 
Sbjct: 870 GVEFGQAVCVDDGHSSYY-FYVPANTAAIEI---NTAHGSGDLNLYANATTWASPTAYQF 925

Query: 778 ASTGAGSHEYLRIPVTQEGYVHFS 801
            S   G+ E +R+    EG+ + S
Sbjct: 926 KSENVGNSEQIRVVSPAEGWFYVS 949