Pairwise Alignments

Query, 818 a.a., collagenase from Vibrio cholerae E7946 ATCC 55056

Subject, 1037 a.a., Collagenase family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  280 bits (716), Expect = 3e-79
 Identities = 164/518 (31%), Positives = 266/518 (51%), Gaps = 10/518 (1%)

Query: 45  QIAVATQACYNSWFYAPTATLDNLYSEASLAHLQTVLDAEIARYTGEAQQARRLENYGEF 104
           ++  +T  C    F    +   +++SEA+++ +   + A+  +YTG   Q   +E++  F
Sbjct: 123 ELTQSTPQCVGKLFNLKGSDASSVFSEANVSTVANAIAAKAPQYTGVDNQG--IESHIYF 180

Query: 105 IRAAYYVR-YNAGREP-YSQALSQRFAQSIDRFLRHPHAFDQGREQVGAMKSLSLMVDNV 162
           +RAA YV+ Y+    P YS A+      +++    +   +         +K   +++D+ 
Sbjct: 181 VRAALYVQFYHPSDVPAYSSAVKNNLKSALNALFANNAIWTLSDANASVLKEALILIDSA 240

Query: 163 KQLPLTMDAMILALHRFNRETAQDTQWVDGLNNLFRAMSGHVGNSEFYRYLAANTQHIDT 222
           +         +  L+ +N             N +F  +     N++     A +   +D 
Sbjct: 241 ELGADFNFVTLKVLNDYNSTWQASFAMNAAANTVFTTLFRAQWNTDMQALFARDHAILDA 300

Query: 223 LYRFALDNEWALETDAEFLVYNALRETGRLLISPDAITKQKARHVMRQVIARYPLGSKHD 282
           L +F L++   L T+AE+++ NA+RE  RL    DA+ + K   +++ ++          
Sbjct: 301 LNQFQLNHRDLLGTNAEYVLVNAVRELSRLYYI-DAM-RPKVTQLVKNILNSTSKNDSSR 358

Query: 283 KLWLAAVEMLHYYAPEVLQQLGIDLDAAKRDLAARILPNRFECQGPAIIRSQDLSDAQAA 342
            LW AA EM  YY           +   K  LAA  LP  ++C     IR+QDL   QA 
Sbjct: 359 VLWFAAAEMADYYDRSNCN--AYQICGFKAQLAADSLPFNWKCSDSLKIRAQDLYQDQAK 416

Query: 343 QACDVLDKKEQDFHQVANTGLAPVADDYNTRVEVVVFANNSSYVNYSSFLFGNTTDNGGQ 402
            AC VL ++E  FH +  TG+  VA D N  +E+V+F ++S Y + ++ +FG  T+NGG 
Sbjct: 417 WACGVLSQQESHFHTILETGMQAVAQDNNDDLELVIFGSSSEYQSLANSIFGINTNNGGM 476

Query: 403 YLEGNPADQNNQARFVAYRYA-NDADLSILNLEHEYTHYLDARFNQYGSFSDNLAHGHIV 461
           YLEG+PA   NQARF+AY       D  + NL+HEY HYLD R+N +G FS +++  + +
Sbjct: 477 YLEGSPAGLKNQARFIAYEAEWRQPDFHVWNLQHEYVHYLDGRYNLFGDFSRSVS-ANTI 535

Query: 462 WWLEGFAEYMHYKQGYQAAVKLISQGKLSLSDVFATTYSNDTNRIYRWGYLAVRFMLEKH 521
           WW+EG AEY+ Y+    AA+ +   G+  LS +F  TY +  +RIYRWGYLAVRFM E H
Sbjct: 536 WWIEGLAEYISYRDANPAAIAMGETGEFMLSTIFKNTYDSGQDRIYRWGYLAVRFMFENH 595

Query: 522 PQDVESLLALSRTGQFDQWAQSVKLLGERYNTEFSAWL 559
             DV  +L   R  Q+ ++   +  +G RY+ E+  WL
Sbjct: 596 RDDVRQILTFLRNNQYAEYQAFMDSIGTRYDNEWRGWL 633



 Score = 54.3 bits (129), Expect = 3e-11
 Identities = 48/198 (24%), Positives = 90/198 (45%), Gaps = 19/198 (9%)

Query: 616  FYVDVPEYSREFHVQISG-EGDADLYMSYQQVAHYYDYQVTEFTYGSNEQITFKPEQNGY 674
            FY  V   + +F V  +G  GDA++Y +    A   + Q +    G+ E  +F   +   
Sbjct: 838  FYFWVDADNSQFSVSTTGGTGDANIYFNANTWASASNAQASSVNQGNKESFSFTANR--- 894

Query: 675  IKPGRYYLSVTGRADYSAVILNTHL------VTEQPNEQPTIKDDLAPVLLEAGNSQSLT 728
               G  Y++V   +++S V  N         V  Q       K  ++   L  G++    
Sbjct: 895  ---GWRYITVDTASEFSGVTFNLKAGGGGSSVPNQIANACATKSPVSYTQLTPGDAVCSA 951

Query: 729  VHRQRYVAIYVPKGVSEVQVWLTASEQNRGNVDLFAAKAYWPTREQFEHASTGAGS-HEY 787
              R  Y  +++P+G S+++V    S    G+V L++ ++ W   +Q+E AST AGS  E 
Sbjct: 952  NGRNDYY-LWIPEGTSQLEV---RSAHGTGDVSLYSGRS-WANAQQYEAASTNAGSTKEQ 1006

Query: 788  LRIPVTQEGYVHFSLNAQ 805
            +++     G+ + +L ++
Sbjct: 1007 IKVNNPSAGWYYITLQSE 1024