Pairwise Alignments

Query, 596 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 640 a.a., Methyl-accepting chemotaxis protein from Pseudomonas stutzeri RCH2

 Score =  262 bits (669), Expect = 4e-74
 Identities = 160/418 (38%), Positives = 255/418 (61%), Gaps = 15/418 (3%)

Query: 187 ALQQLKA--EKYDAANLILLQVINPLYNEIKKAAEAFLDIQTQEGKNNFSASQHEINQFI 244
           ALQQ++   ++Y +A    +Q +      I KA +   D Q +  + + S  Q ++++ +
Sbjct: 226 ALQQIRTVLDEYRSA----IQALETATQAIAKARQEMTDQQKEIVRISDSLYQFQLDR-L 280

Query: 245 WMVSLLGAFALIVTTSLAL--------LIAKRVNNAVHHLASSATHIAAGDLTQRIPVTG 296
            + S      LIV+T LAL        LI +++   +    +    IA+GDL++   +  
Sbjct: 281 DVESSDARSRLIVSTLLALVLGVLAAWLITRQIILPLRTTMADVERIASGDLSETAQIQR 340

Query: 297 NDEFSDIAKYVNRIVTSFQEVISSNRHSVSALATAAEENAAVAMQTKQNIVEQQSQTQQI 356
            DE   + + + ++ ++ +E+I   R  VS ++ AAEE +AV  QT   +  Q+ +T Q+
Sbjct: 341 RDELGVLQRGIQQMGSTLRELIGGIRDGVSQISAAAEELSAVTQQTSAGVNSQKEETDQV 400

Query: 357 AAAIHQFTATVHEVAQSAGLAAEASEEAEQAAMQGRKVVEENIAMIEGLSNDLQKMLAAM 416
           A A+H+ +ATV EVA++A  AA A+ EA+  A +G +VV E +  IE +++ + +   AM
Sbjct: 401 ATAMHEMSATVQEVARNAEQAALAATEADSEAREGDRVVTEVVTQIERMASAVVRSTEAM 460

Query: 417 QLLAKDSEDIGSVVDVIQSISEQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLASRTQ 476
             L ++S+ IGSV++VI++++EQTNLLALNAAIEAARAGE GRGFAVVADEVR LA RTQ
Sbjct: 461 TALQEESDKIGSVMNVIRAVAEQTNLLALNAAIEAARAGEAGRGFAVVADEVRGLAQRTQ 520

Query: 477 ESTKQILQTVQRLQQSSRDSANLIEQGVSGASKAVEKARLAGTALSQITANVDRISTMNT 536
           +ST++I   V  LQ  ++  A+++          VE AR AG +L  IT  V  I  MN 
Sbjct: 521 KSTEEIEGLVAALQNGTQQVASIMHTSRDLTDSGVELARRAGASLGSITRTVSNIQAMNQ 580

Query: 537 QIATASEEQSAVTEEINKNIITISEISNQTALGAQQSSEATLELARLAESMQQEVARY 594
           QIA A+EEQSAV EEI+++++ + ++S QTA  +++++ ++ ELARL   +Q  V+R+
Sbjct: 581 QIAAAAEEQSAVAEEISRSVVNVRDVSEQTAAASEETAASSTELARLGGQLQMMVSRF 638



 Score = 32.7 bits (73), Expect = 5e-05
 Identities = 69/336 (20%), Positives = 140/336 (41%), Gaps = 41/336 (12%)

Query: 141 IQTSLTNLHRIVDNEILATVLDVQEKAVIQTLKEKLDQVTRQGFEPALQQLKAEKYDAAN 200
           ++T++ ++ RI          D+ E A IQ  +++L  + R      +QQ+ +   +   
Sbjct: 317 LRTTMADVERIASG-------DLSETAQIQR-RDELGVLQR-----GIQQMGSTLRE--- 360

Query: 201 LILLQVINPLYNEIKKAAEAFLDI--QTQEGKNN-------FSASQHEINQFIWMVSLLG 251
             L+  I    ++I  AAE    +  QT  G N+        + + HE++  +  V+   
Sbjct: 361 --LIGGIRDGVSQISAAAEELSAVTQQTSAGVNSQKEETDQVATAMHEMSATVQEVARNA 418

Query: 252 AFALIVTTSLALLIAKRVNNAVHHLASSATHIAAGDLTQRIPVTGNDEFSDIAKYVNRIV 311
             A +  T  A   A+  +  V  + +    +A+  +     +T   E SD    V  ++
Sbjct: 419 EQAALAATE-ADSEAREGDRVVTEVVTQIERMASAVVRSTEAMTALQEESDKIGSVMNVI 477

Query: 312 TSFQE---VISSNRHSVSALATAAEENAAVAMQTKQNIVEQ-QSQTQQI---AAAIHQFT 364
            +  E   +++ N    +A A  A    AV     + + ++ Q  T++I    AA+   T
Sbjct: 478 RAVAEQTNLLALNAAIEAARAGEAGRGFAVVADEVRGLAQRTQKSTEEIEGLVAALQNGT 537

Query: 365 ATVHEVAQSAGLAAEASEEAEQAAMQGRKVVEENIAMIEGLSNDLQKMLAAMQLLAKDSE 424
             V  +  ++    ++  E  + A      +   ++ I+ ++   Q++ AA +  +  +E
Sbjct: 538 QQVASIMHTSRDLTDSGVELARRAGASLGSITRTVSNIQAMN---QQIAAAAEEQSAVAE 594

Query: 425 DIGSVVDVIQSISEQTNLLALNAA---IEAARAGEQ 457
           +I   V  ++ +SEQT   +   A    E AR G Q
Sbjct: 595 EISRSVVNVRDVSEQTAAASEETAASSTELARLGGQ 630