Pairwise Alignments

Query, 596 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 676 a.a., Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer from Pseudomonas syringae pv. syringae B728a

 Score =  231 bits (590), Expect = 6e-65
 Identities = 139/346 (40%), Positives = 207/346 (59%), Gaps = 5/346 (1%)

Query: 254 ALIVTTSLALLIA-----KRVNNAVHHLASSATHIAAGDLTQRIPVTGNDEFSDIAKYVN 308
           A+ V   L LL A     + +   +  L      +  GDL+ R+ V   DE +DIA  +N
Sbjct: 327 AMCVIMGLLLLYAFCSIYRALRLTIDSLLGVTRRLGEGDLSARVAVVSKDEVADIANGLN 386

Query: 309 RIVTSFQEVISSNRHSVSALATAAEENAAVAMQTKQNIVEQQSQTQQIAAAIHQFTATVH 368
            +  +F   IS    +   L   A    A     KQ++  QQ++T+Q+A AI++ TA+V 
Sbjct: 387 LMADAFASSISHMDRTSYELTDVASRLGASIGLAKQSMNAQQAETEQVATAINEMTASVA 446

Query: 369 EVAQSAGLAAEASEEAEQAAMQGRKVVEENIAMIEGLSNDLQKMLAAMQLLAKDSEDIGS 428
           +VAQ+   AA A++EA  A+  G +++ +  + I+ L+ +++     +Q LA  S+ IG 
Sbjct: 447 DVAQNTEGAALAADEANTASRNGLRIMHQAHSTIQALAEEVELSAQKVQALALHSQSIGG 506

Query: 429 VVDVIQSISEQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLASRTQESTKQILQTVQR 488
           V+ VI +I++QTNLLALNAAIEAARAGEQGRGFAVVADEVRTLASRTQ ST++I   +Q+
Sbjct: 507 VIQVISTIADQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLASRTQASTEEIRGIIQQ 566

Query: 489 LQQSSRDSANLIEQGVSGASKAVEKARLAGTALSQITANVDRISTMNTQIATASEEQSAV 548
           LQ ++  +   ++ G   A   +  A  A  +LS I+  V+RI  MNTQIA+A+ +Q AV
Sbjct: 567 LQSATDAAVQQMQAGQQKAHACISAASDASGSLSSISQGVERIVEMNTQIASAAVQQHAV 626

Query: 549 TEEINKNIITISEISNQTALGAQQSSEATLELARLAESMQQEVARY 594
           +E+IN+N++ I   S    LG   ++    ELAR+A  M+  VAR+
Sbjct: 627 SEDINRNVMEIRNSSGTLMLGIDNNAVTADELARVASDMRNVVARF 672