Pairwise Alignments

Query, 596 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 541 a.a., methyl-accepting chemotaxis sensory transducer from Pseudomonas syringae pv. syringae B728a

 Score =  242 bits (617), Expect = 3e-68
 Identities = 171/547 (31%), Positives = 300/547 (54%), Gaps = 18/547 (3%)

Query: 52  SVGLRLKLIVVLIVVSILFLGFKGLTGMQSASDSIESLYTKGMQHTIRAGRILDELGSAR 111
           ++  R  L   LI + +  LG+  L  M +   S  ++ T  +        I + +   R
Sbjct: 7   TIARRAGLGFTLISLLVALLGWFALAQMSTIRQSEVAVETNWLPSMRVVNDIREIMLRIR 66

Query: 112 S-QLLLAFQHDPSSKYALMHDHPITMHVEGIQTSLTNLHRIVDNEILATVLDVQEKAVIQ 170
           +  L +A   DP+S     +   + + +  +   L+ L   VD     ++ D Q    + 
Sbjct: 67  TISLRMALDTDPAS--IPTYRGQMDVRLGDLDKKLSVLKTFVDTPEEKSLTD-QFMVTVG 123

Query: 171 TLKEKLDQ---VTRQGFEPALQQLKAEKYDAANLILLQVINPLYNEIKKAAEAFLDIQTQ 227
             +  LD+   +  QG    L +L         + + Q+++    ++   A+ +L     
Sbjct: 124 QYRSALDRSFALASQGDSVGLNKLLL-------VDMKQIVDGSGKQLGDLADFYLTQVDA 176

Query: 228 EGKNNFSASQHEINQFIWMVSLLGAFALIVTTSLALLIAKRVNNAVHHLASSATHIAAGD 287
           EGK+  + +Q++ ++ I ++ ++   A + T  LAL + + +   +    ++A  +A GD
Sbjct: 177 EGKS--AGAQYDKSRDIVIIFVV--IAALCTIGLALWLTRSIVGPLQRAVTAAEQVANGD 232

Query: 288 LTQRIPVTGNDEFSDIAKYVNRIVTSFQEVISSNRHSVSALATAAEENAAVAMQTKQNIV 347
           LT  I V G DE + + + +  +  + +E +     S + LA+AA E  +V   + + + 
Sbjct: 233 LTHTIEVDGEDEVTRLLRALAMMQVNLREAMRHIGSSATQLASAATELNSVTEDSYRGLN 292

Query: 348 EQQSQTQQIAAAIHQFTATVHEVAQSAGLAAEASEEAEQAAMQGRKVVEENIAMIEGLSN 407
           +Q ++  Q A AI++ T+ V EVA++A   ++AS ++  +A+ G+  V E +  I+ L++
Sbjct: 293 QQNAEIDQAATAINEMTSAVEEVARNAVSTSDASNQSSTSALAGQTRVIETVQSIQTLTD 352

Query: 408 DLQKMLAAMQLLAKDSEDIGSVVDVIQSISEQTNLLALNAAIEAARAGEQGRGFAVVADE 467
           ++Q     +Q LA  S+DIG V+DVI+SI+EQTNLLALNAAIEAARAGE GRGFAVVADE
Sbjct: 353 NVQATSTLVQNLANQSQDIGKVLDVIRSIAEQTNLLALNAAIEAARAGESGRGFAVVADE 412

Query: 468 VRTLASRTQESTKQILQTVQRLQQSSRDSANLIEQGVSGASKAVEKARLAGTALSQITAN 527
           VR LA RTQ+ST +I   V  ++  S  + + +    + A   +  A+ AG +LS+IT++
Sbjct: 413 VRALAHRTQQSTLEIDSMVSAMRSGSAQALDSMNTSRARADSTLALAKGAGESLSEITSS 472

Query: 528 VDRISTMNTQIATASEEQSAVTEEINKNIITISEISNQTALGAQQSSEATLELARLAESM 587
           +++IS  N  IA+A+EEQ+ V+ E+++NI+ I ++S Q+  GA Q S ++ EL+RLA  +
Sbjct: 473 INQISERNLVIASAAEEQAQVSREVDRNIVNIRDLSMQSTQGANQISASSHELSRLAADL 532

Query: 588 QQEVARY 594
            Q V+R+
Sbjct: 533 NQVVSRF 539