Pairwise Alignments

Query, 596 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 542 a.a., Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer from Pseudomonas syringae pv. syringae B728a

 Score =  236 bits (602), Expect = 2e-66
 Identities = 171/552 (30%), Positives = 280/552 (50%), Gaps = 18/552 (3%)

Query: 48  NSLHSVGLRLKLIVVLIVVSILFL--GFKGLTGMQSASDSIESLYTKGMQHTIRAGRILD 105
           N ++      KL+   IV +++ L  G  G+ G+   SD++E  ++  +         + 
Sbjct: 2   NMINRTSFAKKLMAAFIVCAMITLAVGGLGMLGINRLSDALELTFSNNLVSVANTNETMT 61

Query: 106 ELGSARSQLLLAFQHDPSSKYALMHDHPITMHVEGIQTSLTNLHRIVDNEILATVLDVQE 165
            L +    L         +    M    I   +E  Q  +  ++R       AT L+  E
Sbjct: 62  ALTTHNRGLYRLLDAKDKATAEKMRQS-INGELERAQ-KVYAIYR-------ATPLEDDE 112

Query: 166 KAV---IQTLKEKLDQVTRQGFEPALQQLKAEKYDAANLILLQVINPLYNEIKKAAEAFL 222
           +A       L       ++  F+  LQQ  A K + A   L  +    +N+ +   +  +
Sbjct: 113 RAAGDQYDALMPAYMSASQNIFD--LQQ--AGKLEDARNRLNALAEGEFNKARGYLQIMI 168

Query: 223 DIQTQEGKNNFSASQHEINQFIWMVSLLGAFALIVTTSLALLIAKRVNNAVHHLASSATH 282
           D   ++ K    A+    +  ++M++     A +V   L +LI + +   +      A  
Sbjct: 169 DSNKRQIKEGAEAADRLQSTSVFMLTAGIVIAFVVAIMLGILITRMITRPLRSAIEVAQR 228

Query: 283 IAAGDLTQRIPVTGNDEFSDIAKYVNRIVTSFQEVISSNRHSVSALATAAEENAAVAMQT 342
           IA+GDLTQ +  T  DE   +   +  +  + +  I     +   LA+AAEE  AV  ++
Sbjct: 229 IASGDLTQSVSSTRGDEAGHLLNAIGTMQGNLKRTIQEISSASDQLASAAEELGAVTEES 288

Query: 343 KQNIVEQQSQTQQIAAAIHQFTATVHEVAQSAGLAAEASEEAEQAAMQGRKVVEENIAMI 402
            + +  Q  + QQ A A+++ TA V EVA++A   +E S+     A  GR  V+  +  I
Sbjct: 289 TRGLTRQNDEIQQAATAVNEMTAAVEEVARNAVSTSEESKSLATDAANGRGQVDNTVKGI 348

Query: 403 EGLSNDLQKMLAAMQLLAKDSEDIGSVVDVIQSISEQTNLLALNAAIEAARAGEQGRGFA 462
             + +++ +   ++  LA    DI  V++VI+SI+EQTNLLALNAAIEAARAGEQGRGFA
Sbjct: 349 GTMVSEITESTGSVTTLAGHVRDISKVLEVIRSIAEQTNLLALNAAIEAARAGEQGRGFA 408

Query: 463 VVADEVRTLASRTQESTKQILQTVQRLQQSSRDSANLIEQGVSGASKAVEKARLAGTALS 522
           VVADEVR LA RTQ ST +I   +  +Q  +  +   + + ++ A+   E A+ AG+AL 
Sbjct: 409 VVADEVRALAHRTQASTVEIEGMIGTVQSGADGAVAAMSKSLATATNTQELAQRAGSALE 468

Query: 523 QITANVDRISTMNTQIATASEEQSAVTEEINKNIITISEISNQTALGAQQSSEATLELAR 582
           +IT+ V  I+  N  IA+ASEEQ+ V  E+++N++ I E+S Q+A GA Q+S ++ EL+R
Sbjct: 469 KITSGVGMINERNMVIASASEEQAQVAREVDRNLVNIQELSAQSAAGANQTSASSQELSR 528

Query: 583 LAESMQQEVARY 594
           LA S    VA++
Sbjct: 529 LATSFNTMVAQF 540