Pairwise Alignments

Query, 596 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 539 a.a., methyl-accepting chemotaxis sensory transducer from Pseudomonas syringae pv. syringae B728a

 Score =  255 bits (652), Expect = 3e-72
 Identities = 177/543 (32%), Positives = 284/543 (52%), Gaps = 12/543 (2%)

Query: 53  VGLRLKLIVVLIVVSILFLGFKGLTGMQSASDSIESLYTKGMQHTIRAGRILDELGSARS 112
           V +R  +  +LI   ++ LG   L  M     S+ESL    M   I+A +I        S
Sbjct: 6   VAVRAGMSFMLITCLLIALGGIALWKMGELRASMESLEKDAMASIIQANKI--------S 57

Query: 113 QLLLAFQHDPSSKYALMHDHPITMHVEGIQTSLTNLHRIVDNEILATVLDVQEKAVIQTL 172
              L  + D     A       T+ V  ++ +  ++  +  +   A +    ++A +   
Sbjct: 58  SATLRLRLDARRLIAQTDPQAQTITVTRLKAAREDM--LKQSAAYAPLASAADEASLYQT 115

Query: 173 KEKLDQVTRQGFEPALQQL-KAEKYDAANLILLQVINPLYNEIKKAAEAFLDIQTQEGKN 231
                Q      +  L+ + K    DA       ++ P+  E++ A +A + +   +   
Sbjct: 116 VTASAQKFASLLDTVLELIQKGANADAVTFTDTNIV-PVTGELQTAIDALVQMNIDQADQ 174

Query: 232 NFSASQHEINQFIWMVSLLGAFALIVTTSLALLIAKRVNNAVHHLASSATHIAAGDLTQR 291
               ++           ++   +LI+T  LA+L+ + +   +  L S    IA+GDL   
Sbjct: 175 LSVRAEAAYESGFMFTVVIIIVSLIITIFLAILLTRSIVTPLKSLLSVNERIASGDLRGD 234

Query: 292 IPVTGNDEFSDIAKYVNRIVTSFQEVISSNRHSVSALATAAEENAAVAMQTKQNIVEQQS 351
           IPVTG+DEFS++ +    +  + ++ I    +S   LA+AAEE   + +Q+   +  Q  
Sbjct: 235 IPVTGDDEFSELQRATLAMQKNLRQTIGLIGNSSQQLASAAEEMNCITVQSSTGLGRQNQ 294

Query: 352 QTQQIAAAIHQFTATVHEVAQSAGLAAEASEEAEQAAMQGRKVVEENIAMIEGLSNDLQK 411
           + +Q A A+++ TA V EVA++A  A++A++E+  + ++G + V   +  IE LS  +  
Sbjct: 295 EIEQAATAVNEMTAAVDEVARNAAAASDAAKESNASTVRGAERVASTVTAIEKLSATVLA 354

Query: 412 MLAAMQLLAKDSEDIGSVVDVIQSISEQTNLLALNAAIEAARAGEQGRGFAVVADEVRTL 471
             A +Q LA  S DI  V+ VI++I+EQTNLLALNAAIEAARAGEQGRGFAVVADEVR L
Sbjct: 355 TSADVQRLAGQSNDISKVLAVIRTIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRAL 414

Query: 472 ASRTQESTKQILQTVQRLQQSSRDSANLIEQGVSGASKAVEKARLAGTALSQITANVDRI 531
           A RTQ+ST++I Q +  + + S  +   +++   GA   +  A  AG AL  I   ++ I
Sbjct: 415 AHRTQQSTQEIEQMIGAVLEGSEQATRSMQESCMGAQDTLGVAHEAGAALDDIARRIEEI 474

Query: 532 STMNTQIATASEEQSAVTEEINKNIITISEISNQTALGAQQSSEATLELARLAESMQQEV 591
           + MNT IATASEEQ+ V   I+ N+I+I ++S Q+  GA Q+S A+ EL+RLA  M   V
Sbjct: 475 NDMNTLIATASEEQAQVARSIDHNLISIRDLSVQSTEGANQTSLASGELSRLAIEMNGVV 534

Query: 592 ARY 594
            R+
Sbjct: 535 TRF 537



 Score = 30.0 bits (66), Expect = 3e-04
 Identities = 52/262 (19%), Positives = 100/262 (38%), Gaps = 9/262 (3%)

Query: 344 QNIVEQQSQTQQIAAAIHQFTATVHEVAQSAGLAAEASEEAEQAAMQGRKVVEENIA-MI 402
           + ++ Q     Q         A    + QSA  A  AS   E +  Q      +  A ++
Sbjct: 68  RRLIAQTDPQAQTITVTRLKAAREDMLKQSAAYAPLASAADEASLYQTVTASAQKFASLL 127

Query: 403 EGLSNDLQKMLAAMQLLAKDSEDI---GSVVDVIQSISEQTNLLALNAAIEAARAGEQGR 459
           + +   +QK   A  +   D+  +   G +   I ++ +     A   ++ A  A E G 
Sbjct: 128 DTVLELIQKGANADAVTFTDTNIVPVTGELQTAIDALVQMNIDQADQLSVRAEAAYESGF 187

Query: 460 GFAVVADEVRTLASRTQES--TKQILQTVQRLQQSSRDSANLIEQG---VSGASKAVEKA 514
            F VV   V  + +       T+ I+  ++ L   +   A+   +G   V+G  +  E  
Sbjct: 188 MFTVVIIIVSLIITIFLAILLTRSIVTPLKSLLSVNERIASGDLRGDIPVTGDDEFSELQ 247

Query: 515 RLAGTALSQITANVDRISTMNTQIATASEEQSAVTEEINKNIITISEISNQTALGAQQSS 574
           R        +   +  I   + Q+A+A+EE + +T + +  +   ++   Q A    + +
Sbjct: 248 RATLAMQKNLRQTIGLIGNSSQQLASAAEEMNCITVQSSTGLGRQNQEIEQAATAVNEMT 307

Query: 575 EATLELARLAESMQQEVARYNA 596
            A  E+AR A +        NA
Sbjct: 308 AAVDEVARNAAAASDAAKESNA 329