Pairwise Alignments

Query, 596 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 491 a.a., Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer from Pseudomonas syringae pv. syringae B728a

 Score =  235 bits (599), Expect = 4e-66
 Identities = 137/358 (38%), Positives = 214/358 (59%), Gaps = 8/358 (2%)

Query: 236 SQHEINQFIWMVSLLGAFALIVTTSLALLIAKRVNNAVHHLASSATHIAAGDLTQRIPVT 295
           + + +  F+ M+ +L A  L++   L+ L A  + + + H+  S      GDL  R+P  
Sbjct: 139 THYAVAVFVLMLLMLCASQLLIRFLLSQLNA--LKDVMLHVEKS------GDLAARVPNR 190

Query: 296 GNDEFSDIAKYVNRIVTSFQEVISSNRHSVSALATAAEENAAVAMQTKQNIVEQQSQTQQ 355
            +DE   +AK  N +   +Q V+++   +   L   A   AA   + +Q ++ QQS+T Q
Sbjct: 191 SDDEVGQMAKAFNAMQAGYQRVVNTVSQTAGRLDQGAAHLAAGMKEVRQGMLGQQSETDQ 250

Query: 356 IAAAIHQFTATVHEVAQSAGLAAEASEEAEQAAMQGRKVVEENIAMIEGLSNDLQKMLAA 415
           +A AI++ TATVH +AQ A    + S+ A+  A  G+ VV+     I GLS+ +Q+    
Sbjct: 251 VATAINEMTATVHHIAQHATATRDQSQTADALAGSGKVVVDRVQVSIAGLSSGVQQTAEM 310

Query: 416 MQLLAKDSEDIGSVVDVIQSISEQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLASRT 475
           +Q +A+DS+ I  VV+VI SI+EQTNLLALNAAIEAARAGE GRGFAVVADEVR LA R 
Sbjct: 311 IQRMAEDSQKINGVVNVIHSIAEQTNLLALNAAIEAARAGEMGRGFAVVADEVRNLAKRV 370

Query: 476 QESTKQILQTVQRLQQSSRDSANLIEQGVSGASKAVEKARLAGTALSQITANVDRISTMN 535
           Q ST +I   V  LQ  +RD+ + +++    A + +++AR AG AL+ I   V ++   N
Sbjct: 371 QTSTDEITTMVSTLQSGTRDAVDFMQESSHKAEECLQQAREAGDALAAIAGAVAQMRESN 430

Query: 536 TQIATASEEQSAVTEEINKNIITISEISNQTALGAQQSSEATLELARLAESMQQEVAR 593
           TQIA A+++QS V EE+N+ +++I +++ +T +    S+  + ELA LA  +   + +
Sbjct: 431 TQIAVAAQQQSQVAEEMNRAVVSIRDVTERTVIQTVDSASTSDELATLAGELNAAIGQ 488



 Score = 30.0 bits (66), Expect = 2e-04
 Identities = 52/278 (18%), Positives = 99/278 (35%), Gaps = 60/278 (21%)

Query: 265 IAKRVNNAVHHLASSATHIAAGDLTQRIPVTGNDEFSD-IAKYVNRIVTSFQEVI---SS 320
           +   V+     L   A H+AAG    R  + G    +D +A  +N +  +   +    ++
Sbjct: 212 VVNTVSQTAGRLDQGAAHLAAGMKEVRQGMLGQQSETDQVATAINEMTATVHHIAQHATA 271

Query: 321 NRHSVSALATAAEENAAVAMQTKQNIVEQQSQTQQIAAAIHQFTA----------TVHEV 370
            R         A     V  + + +I    S  QQ A  I +              +H +
Sbjct: 272 TRDQSQTADALAGSGKVVVDRVQVSIAGLSSGVQQTAEMIQRMAEDSQKINGVVNVIHSI 331

Query: 371 AQSAGLAA-EASEEAEQAAMQGRK---VVEE--NIAM-IEGLSNDLQKMLAAMQLLAKDS 423
           A+   L A  A+ EA +A   GR    V +E  N+A  ++  ++++  M++ +Q   +D+
Sbjct: 332 AEQTNLLALNAAIEAARAGEMGRGFAVVADEVRNLAKRVQTSTDEITTMVSTLQSGTRDA 391

Query: 424 ED----------------------IGSVVDVIQSISEQTNLLALNAAIEAARAGEQGRGF 461
            D                      + ++   +  + E    +A+ A  ++  A E  R  
Sbjct: 392 VDFMQESSHKAEECLQQAREAGDALAAIAGAVAQMRESNTQIAVAAQQQSQVAEEMNRAV 451

Query: 462 -----------------AVVADEVRTLASRTQESTKQI 482
                            A  +DE+ TLA     +  Q+
Sbjct: 452 VSIRDVTERTVIQTVDSASTSDELATLAGELNAAIGQL 489