Pairwise Alignments

Query, 596 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 541 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella loihica PV-4

 Score =  241 bits (614), Expect = 7e-68
 Identities = 156/447 (34%), Positives = 253/447 (56%), Gaps = 12/447 (2%)

Query: 155 EILATVLDVQEKAVIQTLKEKLDQVTRQGFEPALQQLKAEKYDAANLI------LLQVIN 208
           + +AT L   EK ++    E+L     Q      Q L  +  + A  +      L +VI+
Sbjct: 98  QYVATELTTDEKRLVDEA-ERLFVPANQRITHLEQLLGGKSGNIAGQLREEIIPLYRVID 156

Query: 209 PLYNEIKKAAEAFLDIQTQEGKNNFSASQHEINQFIWMVSLLGAFALIVTTSLALLIAKR 268
           P+   I +     L +  +E        +  I+ FI +++L+ A A IV   L + I + 
Sbjct: 157 PISGTIAELISLQLKVAGEEKDRVAEIYESSISLFI-LITLVAAIASIV---LGVWINRS 212

Query: 269 VNNAVHHLASSATHIAA-GDLTQRIPVTGNDEFSDIAKYVNRIVTSFQEVISSNRHSVSA 327
           V   ++H+ +    I    DLT        DE   I+  +N +    + ++     + ++
Sbjct: 213 VMKPINHIRTQLHTIQQDSDLTVTFEQLNKDELGLISTGLNDVFRHLRGILKGVAEAANS 272

Query: 328 LATAAEENAAVAMQTKQNIVEQQSQTQQIAAAIHQFTATVHEVAQSAGLAAEASEEAEQA 387
           ++ +A         +   I +QQ++T+Q A A+++ TATV+EVAQS   AA+++  A++ 
Sbjct: 273 VSDSALALNEFTQISNARIQQQQAETEQTATAMNEMTATVNEVAQSTTAAADSARNADRF 332

Query: 388 AMQGRKVVEENIAMIEGLSNDLQKMLAAMQLLAKDSEDIGSVVDVIQSISEQTNLLALNA 447
           A  G  +V+ +I+ ++ LS  +Q     +  L+ +S+ IGSV+ VI+ I+EQTNLLALNA
Sbjct: 333 AANGNDIVQLSISSMQALSMQIQSTSEVITHLSHESQHIGSVLSVIKGIAEQTNLLALNA 392

Query: 448 AIEAARAGEQGRGFAVVADEVRTLASRTQESTKQILQTVQRLQQSSRDSANLIEQGVSGA 507
           AIEAARAGEQGRGFAVVADEVR+LA RTQE+T++I   ++ LQ    ++   ++ G+   
Sbjct: 393 AIEAARAGEQGRGFAVVADEVRSLAQRTQEATQEIETMIETLQSGVNEAVTAMDVGIKQV 452

Query: 508 SKAVEKARLAGTALSQITANVDRISTMNTQIATASEEQSAVTEEINKNIITISEISNQTA 567
             A ++   AG AL +I A+VD I+ MNT IATA+EEQS+V E IN++II IS+I++Q+ 
Sbjct: 453 DDANQQTNKAGEALQEIVASVDNITEMNTHIATAAEEQSSVAESINRSIIAISDIASQST 512

Query: 568 LGAQQSSEATLELARLAESMQQEVARY 594
             A +   +  +L  LA+SM+Q+V  +
Sbjct: 513 ESALELGHSIAQLTSLADSMRQQVTTF 539