Pairwise Alignments

Query, 596 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 674 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella loihica PV-4

 Score =  248 bits (633), Expect = 6e-70
 Identities = 135/356 (37%), Positives = 227/356 (63%)

Query: 239 EINQFIWMVSLLGAFALIVTTSLALLIAKRVNNAVHHLASSATHIAAGDLTQRIPVTGND 298
           EI+   +    L   A++V   +++ + + + N++  + ++   +A+G+LT ++  +G+D
Sbjct: 317 EIDSASYKTLALVLIAIVVAVLVSIAVIRPLKNSLDKVNNALNILASGNLTHKLDDSGHD 376

Query: 299 EFSDIAKYVNRIVTSFQEVISSNRHSVSALATAAEENAAVAMQTKQNIVEQQSQTQQIAA 358
           EF+++++  NR+V S + +I       + LA AAEE +A+  QT   I EQ++Q  Q+A 
Sbjct: 377 EFAELSRNCNRLVDSLRTLIQGILDRSNQLAAAAEETSAITAQTTAGIQEQKNQVDQVAT 436

Query: 359 AIHQFTATVHEVAQSAGLAAEASEEAEQAAMQGRKVVEENIAMIEGLSNDLQKMLAAMQL 418
           A  Q +++  +V+ SA  A     +A++ A   R + +EN   I  L++++ K    +  
Sbjct: 437 ATTQLSSSAMQVSTSADEALNQIRQADEEAQHMRAIADENKRTILALADEVAKAGQVINK 496

Query: 419 LAKDSEDIGSVVDVIQSISEQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLASRTQES 478
           +  DS  IGS++DVI+ I+EQTNLLALNAAIEAARAGEQGRGFAVVADEVR+LASRTQ+S
Sbjct: 497 VHSDSASIGSILDVIRGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLASRTQDS 556

Query: 479 TKQILQTVQRLQQSSRDSANLIEQGVSGASKAVEKARLAGTALSQITANVDRISTMNTQI 538
           T++I Q +Q LQQ ++++ +++E G   A+  VEK   A  AL  I+  V       T I
Sbjct: 557 TQEIQQMIQVLQQGTQEAVSVMELGRQQANSCVEKTEQANVALESISNAVHYAHDSGTHI 616

Query: 539 ATASEEQSAVTEEINKNIITISEISNQTALGAQQSSEATLELARLAESMQQEVARY 594
           A A++EQ+ V++++++ +  I+ IS +TA GA Q+++++ ++A+LAE +Q  V  +
Sbjct: 617 ANAAQEQNLVSQQVSEKLEHIAAISEETATGADQTAQSSHQVAQLAEELQASVGEF 672