Pairwise Alignments

Query, 596 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 698 a.a., PAS domain S-box from Dechlorosoma suillum PS

 Score =  260 bits (664), Expect = 2e-73
 Identities = 171/557 (30%), Positives = 289/557 (51%), Gaps = 14/557 (2%)

Query: 44  AGTTNSLHSVGLRLKLIVVLIVVSILFLGFKGLTGMQSASDSIESLYTKGMQHTIRAGRI 103
           AG  + L   G    ++   + ++ +  G  GL+G+Q  + S++  Y + ++ T     +
Sbjct: 146 AGFWSRLSVKGRLGAMMAAFVAITAVVTGI-GLSGLQEGNASLQEQYQRKLEPTTVVNEV 204

Query: 104 LDELGSARSQLLLAFQHDPSSKYALMHDHPITMHVEGIQTSLTNLHRI-VDNEILATV-L 161
           L  LG  RSQ++LA QHDP S+ A +HDH + +H+E    +L N  +I    E L  + L
Sbjct: 205 LALLGENRSQIMLALQHDPKSELAKLHDHGLEVHLE---KTLANRQQINAQLEALQKLPL 261

Query: 162 DVQEKAVIQTLKEKLDQVTRQGFEPALQQLKAEKYDAANLILLQVINPLYNEIKKAAEAF 221
             +E+ +++ L E   + + +G   A   LKA  +  A+++LL  INP+Y ++++A +A 
Sbjct: 262 SEKERQLVEQLGEARKKFSAEGVNAARDALKAGDFHQASVLLLTKINPIYGQVQQAGKAL 321

Query: 222 LDIQTQEGKNNFSASQHEINQFIWMVSLLGAFALIVTTSLALLIAKRVNNAVHHLASSAT 281
           +D      + +F  +Q      +W ++L    AL +      L+ + + N +     +  
Sbjct: 322 VDELKASARADFERAQARYENILWAMALATLAALALAVVGGWLLVRAIVNPMRQAIDTFK 381

Query: 282 HIAAGDLTQRIPVTGNDE----FSDIAKYVNRIVTSFQEVISSNRHSVSALATAAEENAA 337
            IA GDLT  I ++  DE       +A     +     ++  ++R      +    E A 
Sbjct: 382 LIAEGDLTSDIDISRRDEAGQLLCQLATMQATLKAMLDQIQEASRQMDQRCSQLESEVAL 441

Query: 338 VAMQTKQNIVEQQSQTQQIAAAIHQFTATVHEVAQSAGLAAEASEEAEQAAMQGRKVVEE 397
           VA +++Q + + QS    IAAA  +F+ +V EVA  AG  A A++ +E+   +    +  
Sbjct: 442 VAAKSQQQLDDVQS----IAAATEEFSQSVQEVAGHAGETASAAQNSERLVEESNTQIGR 497

Query: 398 NIAMIEGLSNDLQKMLAAMQLLAKDSEDIGSVVDVIQSISEQTNLLALNAAIEAARAGEQ 457
           ++A+   +   +    A +  L    + IG +  VI+ I++QTNLLALNAAIEAARAGE 
Sbjct: 498 SMAVTNRVVEAVTGSSATLHELNTAIDQIGQITQVIKEIADQTNLLALNAAIEAARAGEA 557

Query: 458 GRGFAVVADEVRTLASRTQESTKQILQTVQRLQQSSRDSANLIEQGVSGASKAVEKARLA 517
           GRGFAVVADEVR LA RT  ST  I   +  +Q ++ ++ N +EQ V    + +   R +
Sbjct: 558 GRGFAVVADEVRKLAERTTTSTADITGNIGAIQGATHEAVNRMEQAVREVEEGIGMMRES 617

Query: 518 GTALSQITANVDRISTMNTQIATASEEQSAVTEEINKNIITISEISNQTALGAQQSSEAT 577
              L  ITA   ++S M  QI+ AS++QS  ++E+N ++  IS +  Q    AQ++  AT
Sbjct: 618 VAGLEGITAASQQVSAMARQISEASQQQSIASQEVNGSMEHISVLIEQNTATAQEAQRAT 677

Query: 578 LELARLAESMQQEVARY 594
             L   AE ++  +A +
Sbjct: 678 EALVSTAEDLRAILASF 694