Pairwise Alignments

Query, 596 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 546 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  255 bits (651), Expect = 4e-72
 Identities = 168/497 (33%), Positives = 272/497 (54%), Gaps = 45/497 (9%)

Query: 136 MHVEGIQTSLTNLHRIVDNEILATVLDVQEKAVIQTLKEKLDQVTRQGFEPALQQLK--- 192
           MH+  +      L+ ++D       +   + A I+  K++ +   +  FE   QQ     
Sbjct: 57  MHIALLDARRNELNMVID-------VMTHDSAAIEISKQRFE-TAKSEFEAGAQQYAKLN 108

Query: 193 ----------------AEKYDAANLILLQVINP-----LYNEIKKAAEAFLDIQTQEGKN 231
                           AEKY +A+  L+  I+          IK      L++  +E  N
Sbjct: 109 FVSEQDEQLFIKLGEAAEKYFSAHSSLVSAIDQGDMASANIMIKTLTRQTLEVAGEETMN 168

Query: 232 ----NFSASQHEINQF------IWMVSLLGAFALIV-TTSLALLIAKRVNNAVHHLASSA 280
               N  A+Q  + Q         M+S++  F+ I     +A L+ +++ N +  L    
Sbjct: 169 LRHENDRAAQEMVLQSENAYKTAKMLSIIVGFSTIFFVVVMAFLLIRQIQNPIMWLLKQT 228

Query: 281 THIAAGDLTQRIPVTG--NDEFSDIAKYVNRIVTSFQEVISSNRHSVSALATAAEENAAV 338
             ++AG+LT ++ +     DEF  +A+  N +  +   ++S   +S+  L++AAEE ++V
Sbjct: 229 HEVSAGNLTNKLNMNAFARDEFGQLAESFNEMQDNLHMLVSEVSNSIVQLSSAAEEISSV 288

Query: 339 AMQTKQNIVEQQSQTQQIAAAIHQFTATVHEVAQSAGLAAEASEEAEQAAMQGRKVVEEN 398
           A+ +  N+  QQ++  Q+A A+H+  ATV +VA++   AA A+ +A   A QG + V ++
Sbjct: 289 ALHSSNNMETQQNELNQLATAMHEMQATVQDVARNTNDAANAATQASDTATQGSETVNDS 348

Query: 399 IAMIEGLSNDLQKMLAAMQLLAKDSEDIGSVVDVIQSISEQTNLLALNAAIEAARAGEQG 458
           I  I+ ++  ++     ++ L  DS +IG V++VIQ I+EQTNLLALNAAIEAARAGEQG
Sbjct: 349 IVRIDKVAGAIEATAVVIRKLGDDSRNIGMVLEVIQGIAEQTNLLALNAAIEAARAGEQG 408

Query: 459 RGFAVVADEVRTLASRTQESTKQILQTVQRLQQSSRDSANLIEQGVSGASKAVEKARLAG 518
           RGFAVVADEVRTLA RTQ+ST  I   +  LQ  + ++   ++Q      + V KAR AG
Sbjct: 409 RGFAVVADEVRTLAKRTQDSTSHINSIISELQLRANEAEETMQQSQEMMIETVCKAREAG 468

Query: 519 TALSQITANVDRISTMNTQIATASEEQSAVTEEINKNIITISEISNQTALGAQQSSEATL 578
            ++++I+++V  IS MN QIATA+EEQ AV+EE+N+N+  IS  S   A GA+Q + A  
Sbjct: 469 ESIAKISSSVSCISQMNIQIATATEEQGAVSEELNRNVANISGASEDVATGAKQMAMACN 528

Query: 579 ELARLAESMQQEVARYN 595
           +L+ LA  +Q  V +++
Sbjct: 529 DLSHLATQLQDMVKKFH 545