Pairwise Alignments

Query, 462 a.a., ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 438 a.a., sensor histidine kinase (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  135 bits (340), Expect = 3e-36
 Identities = 123/445 (27%), Positives = 213/445 (47%), Gaps = 28/445 (6%)

Query: 20  TRLLLAAALWLGAMILAAGYLIPNLIHQYLLEDVQNQLQLSMDEITANLEANPQGQLTLT 79
           TR LL       A++L   YL+   I     + V ++LQ   D + + LE    G  +L 
Sbjct: 9   TRNLLITLTCAMALLL---YLLFQGIQILTQDFVASRLQHDTDSLISALEPQVDGTWSLN 65

Query: 80  TRLADPRFTQPYSGLYWSATLGDQTLRSRSLWDRFLTEETHVHG-----TIYLGAKEESL 134
                  + +  SG Y++  +G+Q LRSRSL+D  +T  +   G     T Y+G  +E  
Sbjct: 66  ADRLPNVYHRVNSGHYFAIQIGEQQLRSRSLFDHAVTLPSLKVGEQQQATQYVG--QEHW 123

Query: 135 IVLKRTVYLPEFSQPITITIGLDDAPLKATLQR-----VSKELWMILALLFSGILVLTGV 189
           ++L +T+   +  Q I + +  D + L+ T  R      +  L  IL LLF+   +L   
Sbjct: 124 LMLSQTIV--KNGQSIRLWVTEDISSLEQTQLRFLGFATTMVLLTILILLFAQHQLLKR- 180

Query: 190 QVTWSLRPLSKMQRELSALRDGQQNALNGDYPQEISPLVNDLNALLFHYQELLERARHHA 249
                 +PL K+   +  +R   +       P EI+PL+ +++ L+    + ++R+R+  
Sbjct: 181 ----GFKPLEKIPEAIRQMRLQGREIDTQQTPSEITPLIAEIDRLVNQLGQRVQRSRNAL 236

Query: 250 GNLSHALKTPLSVLKNEVTQLNDAQLRIQLQPSVEQIQQQIDYHLGRARMAGSANILSVK 309
           GNL+H +K PL  L++ +      Q R +    + ++   I+  L R ++ G +      
Sbjct: 237 GNLAHEMKRPLQGLQSYLDSQAPEQ-RHEGSKVLAELHHIIERELKRTKIVGLSTPGRF- 294

Query: 310 TAPSARVDAISQAFDKVYAERGITLVNELDSDLEVAVEPTDLDEMIGNLLENSYKWANSL 369
           T  +  +  + Q   ++Y  R I+     D DL +  +  DL E++GNLL+N+ K  +  
Sbjct: 295 TVLNDDLSPLIQVMQRIYPHRRISC--HYDKDLVMPFDRDDLLELLGNLLDNACKHGHKH 352

Query: 370 IR--VHSQILSDDWVQICVEDDGAGISATNREKALKRGVRLDETTPGTGLGLNIVSEMAH 427
           I   +  Q + +    I   DDG G+S       ++RG+RLDE+  G GLGL+I  ++  
Sbjct: 353 IELCIMQQSVPNPGYGIIASDDGEGVSDAAMSIIVERGIRLDESIQGHGLGLSICKDIVD 412

Query: 428 SYRGALALGESQLGGLKATLTLKQP 452
           SY+G L    ++ GGL+A + L  P
Sbjct: 413 SYQGELHFNHAKQGGLEAKVFLPLP 437