Pairwise Alignments

Query, 462 a.a., ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 449 a.a., sensor protein PhoQ (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  149 bits (375), Expect = 2e-40
 Identities = 88/295 (29%), Positives = 153/295 (51%), Gaps = 3/295 (1%)

Query: 157 DDAPLKATLQRVSKELWMILALLFSGILVLTGVQVTWSLRPLSKMQRELSALRDGQQNAL 216
           D A L+    + SK  ++ LA++ +  L+L      W +RPL +MQ EL ++  G+  +L
Sbjct: 154 DAAKLEQEYSKFSKRTYIRLAMVLALALILLVSAAYWGMRPLVRMQNELQSINQGKTKSL 213

Query: 217 NGDYPQEISPLVNDLNALLFHYQELLERARHHAGNLSHALKTPLSVLK--NEVTQLNDAQ 274
           +  YP E+  +   LN LL       +R ++   +L+H+LKT L+ +    + T LN   
Sbjct: 214 SEGYPVELEGVTQALNQLLQQSSAQQQRYQNAMNDLAHSLKTRLAAVHAITDDTSLNKQS 273

Query: 275 LRIQLQPSVEQIQQQIDYHLGRARMAGSANILSVKTAPSARVDAISQAFDKVYAERGITL 334
              ++   + Q+ Q + Y L RA M G   +    T  +  V+ ++Q   K+Y ++ +  
Sbjct: 274 ANEKIMEQISQMDQLVKYQLKRA-MLGRQGLKQEHTPIAPLVEQLAQMLFKIYRDKQVQF 332

Query: 335 VNELDSDLEVAVEPTDLDEMIGNLLENSYKWANSLIRVHSQILSDDWVQICVEDDGAGIS 394
              + ++L       DL E+ GNL+EN+++   S ++V +        ++ VEDDG G+ 
Sbjct: 333 KANISANLLFPGNKGDLMELCGNLMENAFRLCISQVQVTAHFNEQGDFELIVEDDGPGVE 392

Query: 395 ATNREKALKRGVRLDETTPGTGLGLNIVSEMAHSYRGALALGESQLGGLKATLTL 449
              R+K ++RGVR D  +PG G+GL +  E+  SY G+L + ES L G    +T+
Sbjct: 393 EQLRQKIIQRGVRADTQSPGQGIGLAVCDEIVSSYGGSLKIEESHLEGALFRITI 447