Pairwise Alignments

Query, 462 a.a., ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 442 a.a., sensor histidine kinase (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  166 bits (421), Expect = 1e-45
 Identities = 125/452 (27%), Positives = 227/452 (50%), Gaps = 30/452 (6%)

Query: 16  LSLKTRLLLAAALWLGAMILAAGY----LIPNLIHQYLLEDVQNQLQLSMDEITANLEAN 71
           +S++T+L    +LWL  +++        L  +++ Q   + + N+L+  ++ I      N
Sbjct: 2   ISIRTKL----SLWLTGLLVLGTVIGLILFESMLRQAFHDSIINRLEEDLEHIMLATHFN 57

Query: 72  PQGQLTLTTRLADPRFTQPYSGLYWSATLGDQTLRSRSLWDRFLTEETHVHGTIYL---- 127
             G++ +        +   YSG Y+   L ++ +RSRSLWD  L  E        +    
Sbjct: 58  -NGEIHIDQSQLSSFYRPAYSGRYFQLNLPNEVIRSRSLWDMQLDIEPLAPSQTRVWQAK 116

Query: 128 GAKEESLIVLKRTVYLPEFSQPITITIGLDDAPLKATLQRV-----SKELWMILALLFSG 182
           G K   + +L   +     +   T+T+  D +  +     V        L M++A++   
Sbjct: 117 GPKNNDMQLLSLGLNSSSANVTATLTVAQDLSIGRRVFSEVYGTKLGVNLAMLVAMIAGI 176

Query: 183 ILVLTGVQVTWSLRPLSKMQRELSALRDGQQNALN-GDYPQEISPLVNDLNALLFHYQEL 241
            L+L       S +P+ ++Q  LS L++G+  AL   + P E+ PL    N LL +  + 
Sbjct: 177 FLILRQ-----SFKPVKQIQHALSRLQEGEIKALELNNIPPEVQPLAKTYNELLEYTAKQ 231

Query: 242 LERARHHAGNLSHALKTPLSVLKNEVTQ--LNDAQLRIQLQPSVEQIQQQIDYHLGRARM 299
           +ER+R++ GNLSH LKTPL+V++ +V    L D +  + LQ  ++ I + ++  L  AR+
Sbjct: 232 IERSRNNLGNLSHGLKTPLAVMQQQVEALGLKDPETAMALQQQLDAIHKMVERKLAAARI 291

Query: 300 AGSANILSVKTAPSARVDAISQAFDKVYAERGITLVNELDSDLE-VAVEPTDLDEMIGNL 358
            G   + + +      + +++   +KV+  + I+   ELD  ++ + +   D  E++GNL
Sbjct: 292 TGDM-LPAAQLVVPRDLHSLANTLNKVHRSKNISCNFELDPSIQRLPIHREDGMELLGNL 350

Query: 359 LENSYKWANSLIRVHSQILSDDWVQICVEDDGAGISATNREKALKRGVRLDETTPGTGLG 418
           L+N++KWA+S + V     + + + + ++DDG G++    +K  +RG RLDE+  G GLG
Sbjct: 351 LDNAFKWADSQVTV-KLWKAQNKLYLSIDDDGPGVADDELDKLTQRGTRLDESVMGHGLG 409

Query: 419 LNIVSEMAHSYRGALALGES-QLGGLKATLTL 449
           L+IV E+A  Y   L    S +L GL   L L
Sbjct: 410 LSIVKEIAEQYGIELKFTHSRRLSGLCIELVL 441